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| | ==Bordetella pertussis globin coupled sensor regulatory domain (BpeGReg)== | | ==Bordetella pertussis globin coupled sensor regulatory domain (BpeGReg)== |
| - | <StructureSection load='6m9a' size='340' side='right' caption='[[6m9a]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='6m9a' size='340' side='right'caption='[[6m9a]], [[Resolution|resolution]] 2.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6m9a]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_tussis-convulsivae"_lehmann_and_neumann_1927 "bacterium tussis-convulsivae" lehmann and neumann 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6M9A FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6m9a]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M9A FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dosC, ERS1058649_03633 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=520 "Bacterium tussis-convulsivae" Lehmann and Neumann 1927])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diguanylate_cyclase Diguanylate cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.65 2.7.7.65] </span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9a OCA], [https://pdbe.org/6m9a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m9a RCSB], [https://www.ebi.ac.uk/pdbsum/6m9a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9a ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6m9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9a OCA], [http://pdbe.org/6m9a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m9a RCSB], [http://www.ebi.ac.uk/pdbsum/6m9a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9a ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q7VTL8_BORPE Q7VTL8_BORPE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacterium tussis-convulsivae lehmann and neumann 1927]] | + | [[Category: Bordetella pertussis]] |
| - | [[Category: Diguanylate cyclase]] | + | [[Category: Large Structures]] |
| - | [[Category: Dunham, C M]] | + | [[Category: Dunham CM]] |
| - | [[Category: Hoffer, E D]] | + | [[Category: Hoffer ED]] |
| - | [[Category: Rivera, S R]] | + | [[Category: Rivera SR]] |
| - | [[Category: Weinert, E E]] | + | [[Category: Weinert EE]] |
| - | [[Category: Bordetella]]
| + | |
| - | [[Category: Bpeglobin]]
| + | |
| - | [[Category: Bpegreg]]
| + | |
| - | [[Category: Coupled]]
| + | |
| - | [[Category: Fe]]
| + | |
| - | [[Category: Globin]]
| + | |
| - | [[Category: Heme]]
| + | |
| - | [[Category: Iron]]
| + | |
| - | [[Category: Pertussis]]
| + | |
| - | [[Category: Sensor]]
| + | |
| - | [[Category: Signaling protein]]
| + | |
| Structural highlights
Function
Q7VTL8_BORPE
Publication Abstract from PubMed
In order to respond to external stimuli, bacteria have evolved sensor proteins linking external signals to intracellular outputs that can then regulate downstream pathways and phenotypes. Globin coupled sensor proteins (GCSs) serve to link environmental O2 levels to cellular processes by coupling a heme-containing sensor globin domain to a catalytic output domain. However, the mechanism by which O2 binding activates these proteins is currently unknown. To provide insights into the signaling mechanism, two distinct dimeric complexes of the isolated globin domain of the GCS from Bordetella pertussis ( BpeGlobin) were solved via X-ray crystallography in which differences in ligand-bound states were observed. Both monomers of one dimer contain Fe(II)-O2 states, while the other dimer consists of the Fe(III)-H2O and Fe(II)-O2 states. These data provide the first molecular insights into the heme pocket conformation of the active Fe(II)-O2 form of these enzymes. In addition, heme distortion modes and heme-protein interactions were found to correlate with the ligation state of the globin, suggesting that these conformational changes play a role in O2-dependent signaling. Fourier transform infrared spectroscopy (FTIR) of the full-length GCS from B. pertussis ( BpeGReg) and the closely related GCS from Pectobacterium carotovorum ssp. carotovorum ( PccGCS) confirmed the importance of an ordered water within the heme pocket and two distal residues (Tyr43 and Ser68) as hydrogen-bond donors. Taken together, this work provides mechanistic insights into BpeGReg O2 sensing and the signaling mechanisms of diguanylate cyclase-containing GCS proteins.
Structural Insights into Oxygen-Dependent Signal Transduction within Globin Coupled Sensors.,Rivera S, Young PG, Hoffer ED, Vansuch GE, Metzler CL, Dunham CM, Weinert EE Inorg Chem. 2018 Oct 31. doi: 10.1021/acs.inorgchem.8b02584. PMID:30378421[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Rivera S, Young PG, Hoffer ED, Vansuch GE, Metzler CL, Dunham CM, Weinert EE. Structural Insights into Oxygen-Dependent Signal Transduction within Globin Coupled Sensors. Inorg Chem. 2018 Oct 31. doi: 10.1021/acs.inorgchem.8b02584. PMID:30378421 doi:http://dx.doi.org/10.1021/acs.inorgchem.8b02584
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