Sandbox Reserved 1461

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== Function ==
== Function ==
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VesB, a serene protease found in the bacterium Vibrio cholerae, plays an important role in pathogenesis and intestine growth. VesB’s function is cleaving A subunit of cholera toxin, which helps in the activation of itself. The protease’s substrate may consist of a protein with arginine (XXRXX) and the products (XXR+XX).
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<scene name='79/799589/Cartoon_vesb/2'>VesB</scene>, a serene protease found in the bacterium Vibrio cholerae, plays an important role in pathogenesis and intestine growth. VesB’s function is cleaving A subunit of cholera toxin, which helps in the activation of itself. The protease’s substrate may consist of a protein with arginine (XXRXX) and the products (XXR+XX).
== Disease ==
== Disease ==
Cholera, caused by Vibrio cholerae, is an infectious intestinal disease well known for its severe symptoms of diarrhea and cramps, which often results in death. The first sign of whether or not an individual has contracted the disease is the quick onset of diarrhea increasing in intensity over time. Secondary symptoms include vomiting, extreme thirst, abdominal cramps, and a blue-gray coloring. Lastly, the blood would thicken due to loss of fluid.
Cholera, caused by Vibrio cholerae, is an infectious intestinal disease well known for its severe symptoms of diarrhea and cramps, which often results in death. The first sign of whether or not an individual has contracted the disease is the quick onset of diarrhea increasing in intensity over time. Secondary symptoms include vomiting, extreme thirst, abdominal cramps, and a blue-gray coloring. Lastly, the blood would thicken due to loss of fluid.
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== Structural highlights ==
== Structural highlights ==
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This structure is a quaternary structure and the primary <scene name='79/799589/Secondary_structures/1'>Secondary Structures</scene> in VesB is beta sheets. In the molecule it has an alpha helix and some random coils spread around in the structure. VesB is made up of two different domains, it can be shown in this <scene name='79/799589/Vesb_spacefill/6'>spacefill</scene> view. VesB has has two <scene name='79/799596/Disulfide_bonds/1'>disulfide bonds</scene> in it domains. The two different type of domains are the N-terminal and C-terminal domain. This molecule is <scene name='79/799589/Hydrophobic_and_polar/1'>Hydrophobic</scene> and does not react well with water. The hydrophobic are important because they show the area where the active site is located it is labeled in purple. Being hydrophilic shows that it does mix well with water. They are both shown throughout the molecule. The <scene name='79/799589/Active_site/4'>Active Site</scene> of the molecule is made up of 3 amino acids. The amino acids are Asp125-His78-Ser221 which are highlighted in red, blue, and green. The other amino acids that are found in the active site are highlighted black. It has a hydrophobic pocket that is made up of Val159, Val180, Ile164 and has a cleavage site made up of two amino acids Arg32, Ile33.
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This structure is a quaternary structure and the primary <scene name='79/799589/Secondary_structures/1'>Secondary Structures</scene> in VesB is beta sheets. In the molecule it has an alpha helix and some random coils spread around in the structure. VesB is made up of two different domains, it can be shown in this <scene name='79/799589/Vesb_spacefill/6'>spacefill</scene> view. VesB has has two <scene name='79/799596/Disulfide_bonds/1'>disulfide bonds</scene> in it domains. The two different type of domains are the N-terminal and C-terminal domain. This molecule is <scene name='79/799589/Hydrophobic_and_polar/1'>Hydrophobic</scene> and does not react well with water. The hydrophobic view is important because they show the area where the active site is located it is labeled in purple. Being hydrophilic shows that it does mix well with water. They are both shown throughout the molecule. The active site will easily hydrogen bond showing that it is hydrophobic. The <scene name='79/799589/Active_site/4'>Active Site</scene> of the molecule is made up of 3 amino acids. The amino acids are Asp125-His78-Ser221 which are highlighted in red, blue, and green. The other amino acids that are found in the active site are highlighted black. It has a hydrophobic pocket that is made up of Val159, Val180, Ile164 and has a cleavage site made up of two amino acids Arg32, Ile33.
== Kinetic Data ==
== Kinetic Data ==
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VesB activity was measured with different concentrations of Boc-Gln-Ala-Arg-7-amino-4-AMC in 5 mM HEPES, pH 7.5, at 37 °C. B, purified VesB (0.08 g/ml) was incubated with 50M leupeptin, 1 mM benzamidine, or 10 mM EDTA for 10 min at 37 °C. The Boc-Gln-AlaArg-7-amino-4-AMC (0.05 mM final concentration) was added and VesB activity was measured. When Boc-Gln-AlaArg-7-amino-4-AMC increases so does the pmol/min. <ref>https://s3.us-east-1.amazonaws.com/learn-us-east-1-prod-fleet01-xythos/5b158bd279e57/488299?response-content-disposition=inline%3B%20filename%2A%3DUTF-8%27%27J.%2520Biol.%2520Chem.-2014-Gadwal-8288-98%2520Vibrio%2520cholerae%2520serine%2520protease.pdf&response-content-type=application%2Fpdf&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20181116T020506Z&X-Amz-SignedHeaders=host&X-Amz-Expires=21600&X-Amz-Credential=AKIAIBGJ7RCS23L3LEJQ%2F20181116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=9e1220b65465ef522a3848949b1858eade9275dd28253481cb14469e6915e30c</ref><ref> https://www.ebi.ac.uk/interpro/potm/2005_9/Page1.htm</ref><ref>http://www.jbc.org/content/286/19/16555</ref><ref>http://www.jbc.org/content/289/12/8288</ref>
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VesB activity was measured with different concentrations of Boc-Gln-Ala-Arg-7-amino-4-AMC in 5 mM HEPES, pH 7.5, at 37 °C. B, purified VesB (0.08 g/ml) was incubated with 50M leupeptin, 1 mM benzamidine, or 10 mM EDTA for 10 min at 37 °C. The Boc-Gln-AlaArg-7-amino-4-AMC (0.05 mM final concentration) was added and VesB activity was measured. When Boc-Gln-AlaArg-7-amino-4-AMC increases so does the pmol/min. <ref>PMID: 24459146</ref><ref> PMID: 21385872</ref>
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

This Sandbox is Reserved from October 22, 2018 through April 30, 2019 for use in the course Biochemistry taught by Bonnie Hall at the Grand View University, Des Moines, IA USA. This reservation includes Sandbox Reserved 1456 through Sandbox Reserved 1470.
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Structure of Vibrio cholerae protease B, VesB

VesB

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References

  1. Gadwal S, Korotkov KV, Delarosa JR, Hol WG, Sandkvist M. Functional and structural characterization of Vibrio cholerae extracellular serine protease B, VesB. J Biol Chem. 2014 Jan 23. PMID:24459146 doi:http://dx.doi.org/10.1074/jbc.M113.525261
  2. Sikora AE, Zielke RA, Lawrence DA, Andrews PC, Sandkvist M. Proteomic analysis of the Vibrio cholerae type II secretome reveals new proteins, including three related serine proteases. J Biol Chem. 2011 May 13;286(19):16555-66. doi: 10.1074/jbc.M110.211078. Epub, 2011 Mar 8. PMID:21385872 doi:http://dx.doi.org/10.1074/jbc.M110.211078
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