3fif

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==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.==
==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.==
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<StructureSection load='3fif' size='340' side='right' caption='[[3fif]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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<StructureSection load='3fif' size='340' side='right'caption='[[3fif]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli] and [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FIF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FIF FirstGlance]. <br>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jno|2jno]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ygdR, b2833, JW2801 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [https://pdbe.org/3fif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [https://www.ebi.ac.uk/pdbsum/3fif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fif ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [http://pdbe.org/3fif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [http://www.ebi.ac.uk/pdbsum/3fif PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fif ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/YGDR_ECOLI YGDR_ECOLI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ecoli]]
 
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Acton, T B]]
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[[Category: Escherichia coli K-12]]
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[[Category: Baran, M]]
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[[Category: Large Structures]]
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[[Category: Chen, C X]]
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[[Category: Acton TB]]
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[[Category: Cunningham, K]]
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[[Category: Baran M]]
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[[Category: Hunt, J F]]
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[[Category: Chen CX]]
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[[Category: Jiang, M]]
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[[Category: Cunningham K]]
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[[Category: Kuzin, A P]]
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[[Category: Hunt JF]]
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[[Category: Liu, J C]]
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[[Category: Jiang M]]
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[[Category: Ma, L]]
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[[Category: Kuzin AP]]
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[[Category: Montelione, G T]]
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[[Category: Liu JC]]
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[[Category: Structural genomic]]
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[[Category: Ma L]]
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[[Category: Rossi, P]]
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[[Category: Montelione GT]]
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[[Category: Rost, B]]
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[[Category: Rossi P]]
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[[Category: Seetharaman, J]]
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[[Category: Rost B]]
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[[Category: Su, M]]
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[[Category: Seetharaman J]]
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[[Category: Swapna, G V.T]]
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[[Category: Su M]]
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[[Category: Tong, L]]
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[[Category: Swapna GVT]]
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[[Category: Xiao, R]]
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[[Category: Tong L]]
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[[Category: Cell membrane]]
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[[Category: Xiao R]]
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[[Category: Lipoprotein]]
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[[Category: Membrane]]
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[[Category: Palmitate]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Unknown function]]
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[[Category: Ygdr ygdr_ecoli nesg x-ray structure]]
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Current revision

Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.

PDB ID 3fif

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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