353d

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[[Image:353d.gif|left|200px]]
 
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{{Structure
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==CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE==
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|PDB= 353d |SIZE=350|CAPTION= <scene name='initialview01'>353d</scene>, resolution 2.400&Aring;
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<StructureSection load='353d' size='340' side='right'caption='[[353d]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5&#39;-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
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<table><tr><td colspan='2'>[[353d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=353D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=353D FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=353d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=353d OCA], [https://pdbe.org/353d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=353d RCSB], [https://www.ebi.ac.uk/pdbsum/353d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=353d ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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<div style="background-color:#fffaf0;">
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=353d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=353d OCA], [http://www.ebi.ac.uk/pdbsum/353d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=353d RCSB]</span>
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== Publication Abstract from PubMed ==
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}}
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'''CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE'''
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==Overview==
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This is the first high resolution crystal structure of an RNA molecule made by solid phase chemical synthesis and representing a natural RNA. The structure of the domain A of Thermus flavus ribosomal 5S RNA is refined to R = 18% at 2.4 A including 159 solvent molecules. Most of the 2'-hydroxyl groups as well as the phosphate oxygens are involved either in specific hydrogen bonds in intermolecular contacts or to solvent molecules. The two U-G and G-U base-pairs are stabilized by H-bonds supplied via three water molecules to compensate for the lack of base-pair hydrogen bonds. The structure shows for the first time in detail the importance of highly ordered internal water in stabilizing an RNA structure.
This is the first high resolution crystal structure of an RNA molecule made by solid phase chemical synthesis and representing a natural RNA. The structure of the domain A of Thermus flavus ribosomal 5S RNA is refined to R = 18% at 2.4 A including 159 solvent molecules. Most of the 2'-hydroxyl groups as well as the phosphate oxygens are involved either in specific hydrogen bonds in intermolecular contacts or to solvent molecules. The two U-G and G-U base-pairs are stabilized by H-bonds supplied via three water molecules to compensate for the lack of base-pair hydrogen bonds. The structure shows for the first time in detail the importance of highly ordered internal water in stabilizing an RNA structure.
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==About this Structure==
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Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure.,Betzel C, Lorenz S, Furste JP, Bald R, Zhang M, Schneider TR, Wilson KS, Erdmann VA FEBS Lett. 1994 Sep 5;351(2):159-64. PMID:8082756<ref>PMID:8082756</ref>
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353D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=353D OCA].
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==Reference==
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Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure., Betzel C, Lorenz S, Furste JP, Bald R, Zhang M, Schneider TR, Wilson KS, Erdmann VA, FEBS Lett. 1994 Sep 5;351(2):159-64. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8082756 8082756]
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[[Category: Protein complex]]
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[[Category: Bald, R.]]
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[[Category: Betzel, C.]]
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[[Category: Erdmann, V A.]]
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[[Category: Furste, J P.]]
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[[Category: Lorenz, S.]]
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[[Category: Schneider, T R.]]
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[[Category: Wilson, K S.]]
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[[Category: Zhang, M.]]
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[[Category: a-rna]]
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[[Category: double strand]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:21:39 2008''
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 353d" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Bald R]]
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[[Category: Betzel C]]
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[[Category: Erdmann VA]]
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[[Category: Furste JP]]
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[[Category: Lorenz S]]
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[[Category: Schneider TR]]
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[[Category: Wilson KS]]
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[[Category: Zhang M]]

Current revision

CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE

PDB ID 353d

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