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| ==Crystal structure of the CopA C-terminal metal binding domain== | | ==Crystal structure of the CopA C-terminal metal binding domain== |
- | <StructureSection load='3fry' size='340' side='right' caption='[[3fry]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='3fry' size='340' side='right'caption='[[3fry]], [[Resolution|resolution]] 2.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3fry]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfl Arcfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FRY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FRY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3fry]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FRY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FRY FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_0473, copA, pacS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 ARCFL])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fry OCA], [http://pdbe.org/3fry PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fry RCSB], [http://www.ebi.ac.uk/pdbsum/3fry PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fry ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fry OCA], [https://pdbe.org/3fry PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fry RCSB], [https://www.ebi.ac.uk/pdbsum/3fry PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fry ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/COPA_ARCFU COPA_ARCFU]] Probably involved in copper and silver export.<ref>PMID:11756450</ref> | + | [https://www.uniprot.org/uniprot/COPA_ARCFU COPA_ARCFU] Probably involved in copper and silver export.<ref>PMID:11756450</ref> |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| <jmolCheckbox> | | <jmolCheckbox> |
| <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fr/3fry_consurf.spt"</scriptWhenChecked> | | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fr/3fry_consurf.spt"</scriptWhenChecked> |
- | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
| </jmolCheckbox> | | </jmolCheckbox> |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arcfl]] | + | [[Category: Archaeoglobus fulgidus]] |
- | [[Category: Agarwal, S]] | + | [[Category: Large Structures]] |
- | [[Category: Arguello, J]] | + | [[Category: Agarwal S]] |
- | [[Category: Rosenzweig, A C]] | + | [[Category: Arguello J]] |
- | [[Category: Sazinsky, M]] | + | [[Category: Rosenzweig AC]] |
- | [[Category: Atp-binding]]
| + | [[Category: Sazinsky M]] |
- | [[Category: Cell membrane]]
| + | |
- | [[Category: Copper transport]]
| + | |
- | [[Category: Domain swap]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Ion transport]]
| + | |
- | [[Category: Magnesium]]
| + | |
- | [[Category: Membrane]]
| + | |
- | [[Category: Metal binding domain]]
| + | |
- | [[Category: Metal-binding]]
| + | |
- | [[Category: Nucleotide-binding]]
| + | |
- | [[Category: Phosphoprotein]]
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- | [[Category: Transmembrane]]
| + | |
- | [[Category: Transport]]
| + | |
- | [[Category: Transport protein]]
| + | |
| Structural highlights
Function
COPA_ARCFU Probably involved in copper and silver export.[1]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The Cu(+)-ATPase CopA from Archaeoglobus fulgidus belongs to the P(1B) family of the P-type ATPases. These integral membrane proteins couple the energy of ATP hydrolysis to heavy metal ion translocation across membranes. A defining feature of P(1B-1)-type ATPases is the presence of soluble metal binding domains at the N-terminus (N-MBDs). The N-MBDs exhibit a conserved ferredoxin-like fold, similar to that of soluble copper chaperones, and bind metal ions via a conserved CXXC motif. The N-MBDs enable Cu(+) regulation of turnover rates apparently through Cu-sensitive interactions with catalytic domains. A. fulgidus CopA is unusual in that it contains both an N-terminal MBD and a C-terminal MBD (C-MBD). The functional role of the unique C-MBD has not been established. Here, we report the crystal structure of the apo, oxidized C-MBD to 2.0 A resolution. In the structure, two C-MBD monomers form a domain-swapped dimer, which has not been observed previously for similar domains. In addition, the interaction of the C-MBD with the other cytoplasmic domains of CopA, the ATP binding domain (ATPBD) and actuator domain (A-domain), has been investigated. Interestingly, the C-MBD interacts specifically with both of these domains, independent of the presence of Cu(+) or nucleotides. These data reinforce the uniqueness of the C-MBD and suggest a distinct structural role for the C-MBD in CopA transport.
Structure and interactions of the C-terminal metal binding domain of Archaeoglobus fulgidus CopA.,Agarwal S, Hong D, Desai NK, Sazinsky MH, Arguello JM, Rosenzweig AC Proteins. 2010 Aug 15;78(11):2450-8. PMID:20602459[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Mandal AK, Cheung WD, Arguello JM. Characterization of a thermophilic P-type Ag+/Cu+-ATPase from the extremophile Archaeoglobus fulgidus. J Biol Chem. 2002 Mar 1;277(9):7201-8. Epub 2001 Dec 26. PMID:11756450 doi:10.1074/jbc.M109964200
- ↑ Agarwal S, Hong D, Desai NK, Sazinsky MH, Arguello JM, Rosenzweig AC. Structure and interactions of the C-terminal metal binding domain of Archaeoglobus fulgidus CopA. Proteins. 2010 Aug 15;78(11):2450-8. PMID:20602459 doi:10.1002/prot.22753
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