3gwn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:51, 21 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of the FAD binding domain from mimivirus sulfhydryl oxidase R596==
==Crystal structure of the FAD binding domain from mimivirus sulfhydryl oxidase R596==
-
<StructureSection load='3gwn' size='340' side='right' caption='[[3gwn]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
+
<StructureSection load='3gwn' size='340' side='right'caption='[[3gwn]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gwn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Apmv Apmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GWN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GWN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gwn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acanthamoeba_polyphaga_mimivirus Acanthamoeba polyphaga mimivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GWN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GWN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1jr8|1jr8]], [[1oqc|1oqc]], [[2hj3|2hj3]], [[3gwl|3gwl]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MIMI_R596, R596 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 APMV])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gwn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gwn OCA], [https://pdbe.org/3gwn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gwn RCSB], [https://www.ebi.ac.uk/pdbsum/3gwn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gwn ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thiol_oxidase Thiol oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.3.2 1.8.3.2] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gwn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gwn OCA], [http://pdbe.org/3gwn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gwn RCSB], [http://www.ebi.ac.uk/pdbsum/3gwn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gwn ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/YR596_MIMIV YR596_MIMIV]] FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation (By similarity).
+
[https://www.uniprot.org/uniprot/YR596_MIMIV YR596_MIMIV] FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 17: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gw/3gwn_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gw/3gwn_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 35: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Apmv]]
+
[[Category: Acanthamoeba polyphaga mimivirus]]
-
[[Category: Thiol oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Fass, D]]
+
[[Category: Fass D]]
-
[[Category: Hakim, M]]
+
[[Category: Hakim M]]
-
[[Category: Disulfide bond]]
+
-
[[Category: Fad]]
+
-
[[Category: Five helix bundle]]
+
-
[[Category: Flavoprotein]]
+
-
[[Category: Homodimer]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Virion]]
+

Current revision

Crystal structure of the FAD binding domain from mimivirus sulfhydryl oxidase R596

PDB ID 3gwn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gwn"
Personal tools