This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3b48

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:23, 5 January 2022) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3b48.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of unknown function protein EF1359==
-
|PDB= 3b48 |SIZE=350|CAPTION= <scene name='initialview01'>3b48</scene>, resolution 2.21&Aring;
+
<StructureSection load='3b48' size='340' side='right'caption='[[3b48]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[3b48]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B48 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= EF_1359 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 Enterococcus faecalis V583])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_1359 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3412 COG3412]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b48 OCA], [https://pdbe.org/3b48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b48 RCSB], [https://www.ebi.ac.uk/pdbsum/3b48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b48 ProSAT], [https://www.topsan.org/Proteins/MCSG/3b48 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b48 OCA], [http://www.ebi.ac.uk/pdbsum/3b48 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3b48 RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal structure of unknown function protein EF1359'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/3b48_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
3B48 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis_v583 Enterococcus faecalis v583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B48 OCA].
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b48 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Entfa]]
 +
[[Category: Large Structures]]
 +
[[Category: Chang, C]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Li, H]]
 +
[[Category: Structural genomic]]
 +
[[Category: Moy, S]]
[[Category: Enterococcus faecalis v583]]
[[Category: Enterococcus faecalis v583]]
-
[[Category: Single protein]]
+
[[Category: Mcsg]]
-
[[Category: Chang, C.]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Unknown function]]
-
[[Category: Li, H.]]
+
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
-
[[Category: Moy, S.]]
+
-
[[Category: enterococcus faecalis v583]]
+
-
[[Category: mcsg]]
+
-
[[Category: midwest center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:22:51 2008''
+

Current revision

Crystal structure of unknown function protein EF1359

PDB ID 3b48

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools