This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3b52

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3b52.gif|left|200px]]
 
-
{{Structure
+
==Ni,Fe-CODH-600 mV state + CO2==
-
|PDB= 3b52 |SIZE=350|CAPTION= <scene name='initialview01'>3b52</scene>, resolution 1.500&Aring;
+
<StructureSection load='3b52' size='340' side='right'caption='[[3b52]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=B51:NICKEL/IRON/SULFUR+CLUSTER'>B51</scene>, <scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>
+
<table><tr><td colspan='2'>[[3b52]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans_Z-2901 Carboxydothermus hydrogenoformans Z-2901]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B52 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Carbon-monoxide_dehydrogenase_(acceptor) Carbon-monoxide dehydrogenase (acceptor)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.99.2 1.2.99.2] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= cooS2, cooSII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=129958 Carboxydothermus hydrogenoformans])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=WCC:FE(3)-NI(1)-S(4)+CLUSTER'>WCC</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b52 OCA], [https://pdbe.org/3b52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b52 RCSB], [https://www.ebi.ac.uk/pdbsum/3b52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b52 ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[3b51|3B51]], [[3b53|3B53]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b52 OCA], [http://www.ebi.ac.uk/pdbsum/3b52 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3b52 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/COOS2_CARHZ COOS2_CARHZ] CODH oxidizes carbon monoxide coupled, via CooF, to the reduction of a hydrogen cation by a hydrogenase (possibly CooH) (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b5/3b52_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b52 ConSurf].
 +
<div style="clear:both"></div>
-
'''Ni,Fe-CODH-600 mV state + CO2'''
+
==See Also==
-
 
+
*[[Carbon monoxide dehydrogenase|Carbon monoxide dehydrogenase]]
-
 
+
*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
-
==About this Structure==
+
*[[Iron–sulfur proteins|Iron–sulfur proteins]]
-
3B52 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans Carboxydothermus hydrogenoformans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B52 OCA].
+
__TOC__
-
[[Category: Carbon-monoxide dehydrogenase (acceptor)]]
+
</StructureSection>
-
[[Category: Carboxydothermus hydrogenoformans]]
+
[[Category: Carboxydothermus hydrogenoformans Z-2901]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Dobbek, H.]]
+
[[Category: Dobbek H]]
-
[[Category: Jeoung, J H.]]
+
[[Category: Jeoung JH]]
-
[[Category: 4fe-4]]
+
-
[[Category: cluster c]]
+
-
[[Category: cytoplasm]]
+
-
[[Category: iron]]
+
-
[[Category: iron-sulfur]]
+
-
[[Category: membrane]]
+
-
[[Category: metal-binding]]
+
-
[[Category: nickel]]
+
-
[[Category: oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:23:03 2008''
+

Current revision

Ni,Fe-CODH-600 mV state + CO2

PDB ID 3b52

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3b52"
Personal tools