This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3b8f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:27, 5 January 2022) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3b8f.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the cytidine deaminase from Bacillus anthracis==
-
|PDB= 3b8f |SIZE=350|CAPTION= <scene name='initialview01'>3b8f</scene>, resolution 1.90&Aring;
+
<StructureSection load='3b8f' size='340' side='right'caption='[[3b8f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[3b8f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B8F FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosine_deaminase Adenosine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.4 3.5.4.4] </span>
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS3426, BA_3696, GBAA3696 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 "Bacillus cereus var. anthracis" (Cohn 1872) Smith et al. 1946])</td></tr>
-
|GENE= BAS3426, BA_3696, GBAA3696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Adenosine_deaminase Adenosine deaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.4 3.5.4.4] </span></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b8f OCA], [https://pdbe.org/3b8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b8f RCSB], [https://www.ebi.ac.uk/pdbsum/3b8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b8f ProSAT], [https://www.topsan.org/Proteins/MCSG/3b8f TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b8f OCA], [http://www.ebi.ac.uk/pdbsum/3b8f PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3b8f RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal structure of the cytidine deaminase from Bacillus anthracis'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b8/3b8f_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
3B8F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B8F OCA].
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b8f ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Adenosine deaminase]]
[[Category: Adenosine deaminase]]
 +
[[Category: Large Structures]]
 +
[[Category: Gornicki, P]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Joachimiak, G]]
 +
[[Category: Structural genomic]]
 +
[[Category: Patterson, S]]
 +
[[Category: Wu, R]]
 +
[[Category: Zhang, R]]
[[Category: Bacillus anthracis]]
[[Category: Bacillus anthracis]]
-
[[Category: Single protein]]
+
[[Category: Cytidine deaminase]]
-
[[Category: Gornicki, P.]]
+
[[Category: Hydrolase]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Mcsg]]
-
[[Category: Joachimiak, G.]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
-
[[Category: Patterson, S.]]
+
-
[[Category: Wu, R.]]
+
-
[[Category: Zhang, R.]]
+
-
[[Category: bacillus anthracis]]
+
-
[[Category: cytidine deaminase]]
+
-
[[Category: hydrolase]]
+
-
[[Category: mcsg]]
+
-
[[Category: midwest center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:24:06 2008''
+

Current revision

Crystal structure of the cytidine deaminase from Bacillus anthracis

PDB ID 3b8f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools