3b8l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:41, 17 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3b8l.gif|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF A PUTATIVE AROMATIC RING HYDROXYLASE (SARO_3538) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM AT 1.75 A RESOLUTION==
-
|PDB= 3b8l |SIZE=350|CAPTION= <scene name='initialview01'>3b8l</scene>, resolution 1.750&Aring;
+
<StructureSection load='3b8l' size='340' side='right'caption='[[3b8l]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>
+
<table><tr><td colspan='2'>[[3b8l]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_DSM_12444 Novosphingobium aromaticivorans DSM 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B8L FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
|GENE= YP_001165924.1, Saro_3538 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=279238 Novosphingobium aromaticivorans DSM 12444])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b8l OCA], [https://pdbe.org/3b8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b8l RCSB], [https://www.ebi.ac.uk/pdbsum/3b8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b8l ProSAT], [https://www.topsan.org/Proteins/JCSG/3b8l TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b8l OCA], [http://www.ebi.ac.uk/pdbsum/3b8l PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3b8l RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/A4XEN7_NOVAD A4XEN7_NOVAD]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of NTF2-like protein of unknown function (YP_001165924.1) from Novosphingobium aromaticivorans DSM 12444 at 1.75 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b8/3b8l_consurf.spt"</scriptWhenChecked>
-
3B8L is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B8L OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Novosphingobium aromaticivorans dsm 12444]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b8l ConSurf].
-
[[Category: jcsg]]
+
<div style="clear:both"></div>
-
[[Category: joint center for structural genomic]]
+
__TOC__
-
[[Category: ntf2-like protein of unknown function]]
+
</StructureSection>
-
[[Category: plasmid]]
+
[[Category: Large Structures]]
-
[[Category: protein structure initiative]]
+
[[Category: Novosphingobium aromaticivorans DSM 12444]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
[[Category: yp_001165924 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:24:09 2008''
+

Current revision

CRYSTAL STRUCTURE OF A PUTATIVE AROMATIC RING HYDROXYLASE (SARO_3538) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM AT 1.75 A RESOLUTION

PDB ID 3b8l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools