6naj
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6naj is ON HOLD Authors: van Agthoven, J.F., Armaout, M.A. Description: Integrin AlphaVBeta3 ectodomain bound to Hr10 variant of the 10th domain of...) |
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- | '''Unreleased structure''' | ||
- | + | ==Integrin AlphaVBeta3 ectodomain bound to Hr10 variant of the 10th domain of Fibronectin.== | |
+ | <StructureSection load='6naj' size='340' side='right'caption='[[6naj]], [[Resolution|resolution]] 3.10Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6naj]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NAJ FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HRG:L-HOMOARGININE'>HRG</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6naj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6naj OCA], [https://pdbe.org/6naj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6naj RCSB], [https://www.ebi.ac.uk/pdbsum/6naj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6naj ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/ITAV_HUMAN ITAV_HUMAN] The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen, laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin and vWF. They recognize the sequence R-G-D in a wide array of ligands. In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | A prevailing dogma is that inhibition of vascular thrombosis by antagonizing platelet integrin alphaIIbbeta3 cannot be achieved without compromising hemostasis, thus causing serious bleeding and increased morbidity and mortality. It is speculated that these adverse outcomes result from drug-induced activating conformational changes in alphaIIbbeta3 but direct proof is lacking. Here, we report the structure-guided design of peptide Hr10 and a modified form of the partial agonist drug tirofiban that act as "pure" antagonists of alphaIIbbeta3, i.e., they no longer induce the conformational changes in alphaIIbbeta3. Both agents inhibit human platelet aggregation but preserve clot retraction. Hr10 and modified tirofiban are as effective as partial agonist drugs in inhibiting vascular thrombosis in humanized mice, but neither causes serious bleeding, establishing a causal link between partial agonism and impaired hemostasis. Pure orthosteric inhibitors of alphaIIbbeta3 may thus provide safer alternatives for human therapy, and valuable tools to probe structure-activity relationships in integrins. | ||
- | + | Structure-guided design of pure orthosteric inhibitors of alphaIIbbeta3 that prevent thrombosis but preserve hemostasis.,Adair BD, Alonso JL, van Agthoven J, Hayes V, Ahn HS, Yu IS, Lin SW, Xiong JP, Poncz M, Arnaout MA Nat Commun. 2020 Jan 21;11(1):398. doi: 10.1038/s41467-019-13928-2. PMID:31964886<ref>PMID:31964886</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 6naj" style="background-color:#fffaf0;"></div> |
- | [[Category: Van Agthoven | + | |
+ | ==See Also== | ||
+ | *[[Fibronectin 3D structures|Fibronectin 3D structures]] | ||
+ | *[[Integrin 3D structures|Integrin 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Arnaout MA]] | ||
+ | [[Category: Van Agthoven J]] |
Current revision
Integrin AlphaVBeta3 ectodomain bound to Hr10 variant of the 10th domain of Fibronectin.
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