3bb7

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[[Image:3bb7.gif|left|200px]]
 
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{{Structure
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==Structure of Prevotella intermedia prointerpain A fragment 39-359 (mutant C154A)==
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|PDB= 3bb7 |SIZE=350|CAPTION= <scene name='initialview01'>3bb7</scene>, resolution 1.50&Aring;
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<StructureSection load='3bb7' size='340' side='right'caption='[[3bb7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[3bb7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Prevotella_intermedia Prevotella intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BB7 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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|GENE= PIN0048 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=28131 Prevotella intermedia])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bb7 OCA], [https://pdbe.org/3bb7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bb7 RCSB], [https://www.ebi.ac.uk/pdbsum/3bb7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bb7 ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=[[3bba|3BBA]]
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bb7 OCA], [http://www.ebi.ac.uk/pdbsum/3bb7 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bb7 RCSB]</span>
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[https://www.uniprot.org/uniprot/A9J7N5_PREIN A9J7N5_PREIN]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Structure of Prevotella intermedia prointerpain A fragment 39-359 (mutant C154A)'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bb/3bb7_consurf.spt"</scriptWhenChecked>
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==Overview==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bb7 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
Prevotella intermedia is a major periodontopathogen contributing to human gingivitis and periodontitis. Such pathogens release proteases as virulence factors that cause deterrence of host defenses and tissue destruction. A new cysteine protease from the cysteine-histidine-dyad class, interpain A, was studied in its zymogenic and self-processed mature forms. The latter consists of a bivalved moiety made up by two subdomains. In the structure of a catalytic cysteine-to-alanine zymogen variant, the right subdomain interacts with an unusual prodomain, thus contributing to latency. Unlike the catalytic cysteine residue, already in its competent conformation in the zymogen, the catalytic histidine is swung out from its active conformation and trapped in a cage shaped by a backing helix, a zymogenic hairpin, and a latency flap in the zymogen. Dramatic rearrangement of up to 20A of these elements triggered by a tryptophan switch occurs during activation and accounts for a new activation mechanism for proteolytic enzymes. These findings can be extrapolated to related potentially pathogenic cysteine proteases such as Streprococcus pyogenes SpeB and Porphyromonas gingivalis periodontain.
Prevotella intermedia is a major periodontopathogen contributing to human gingivitis and periodontitis. Such pathogens release proteases as virulence factors that cause deterrence of host defenses and tissue destruction. A new cysteine protease from the cysteine-histidine-dyad class, interpain A, was studied in its zymogenic and self-processed mature forms. The latter consists of a bivalved moiety made up by two subdomains. In the structure of a catalytic cysteine-to-alanine zymogen variant, the right subdomain interacts with an unusual prodomain, thus contributing to latency. Unlike the catalytic cysteine residue, already in its competent conformation in the zymogen, the catalytic histidine is swung out from its active conformation and trapped in a cage shaped by a backing helix, a zymogenic hairpin, and a latency flap in the zymogen. Dramatic rearrangement of up to 20A of these elements triggered by a tryptophan switch occurs during activation and accounts for a new activation mechanism for proteolytic enzymes. These findings can be extrapolated to related potentially pathogenic cysteine proteases such as Streprococcus pyogenes SpeB and Porphyromonas gingivalis periodontain.
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==About this Structure==
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A new autocatalytic activation mechanism for cysteine proteases revealed by Prevotella intermedia interpain A.,Mallorqui-Fernandez N, Manandhar SP, Mallorqui-Fernandez G, Uson I, Wawrzonek K, Kantyka T, Sola M, Thogersen IB, Enghild JJ, Potempa J, Gomis-Ruth FX J Biol Chem. 2008 Feb 1;283(5):2871-82. Epub 2007 Nov 9. PMID:17993455<ref>PMID:17993455</ref>
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3BB7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Prevotella_intermedia Prevotella intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BB7 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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A New Autocatalytic Activation Mechanism for Cysteine Proteases Revealed by Prevotella intermedia Interpain A., Mallorqui-Fernandez N, Manandhar SP, Mallorqui-Fernandez G, Uson I, Wawrzonek K, Kantyka T, Sola M, Thogersen IB, Enghild JJ, Potempa J, Gomis-Ruth FX, J Biol Chem. 2008 Feb 1;283(5):2871-82. Epub 2007 Nov 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17993455 17993455]
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</div>
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<div class="pdbe-citations 3bb7" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Prevotella intermedia]]
[[Category: Prevotella intermedia]]
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[[Category: Single protein]]
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[[Category: Enghild JJ]]
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[[Category: Enghild, J J.]]
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[[Category: Gomis-Ruth FX]]
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[[Category: Gomis-Ruth, F X.]]
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[[Category: Kantyka T]]
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[[Category: Kantyka, T.]]
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[[Category: Mallorqui-Fernandez G]]
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[[Category: Mallorqui-Fernandez, G.]]
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[[Category: Mallorqui-Fernandez N]]
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[[Category: Mallorqui-Fernandez, N.]]
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[[Category: Manandhar SP]]
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[[Category: Manandhar, S P.]]
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[[Category: Potempa J]]
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[[Category: Potempa, J.]]
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[[Category: Sola M]]
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[[Category: Sola, M.]]
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[[Category: Thogersen IB]]
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[[Category: Thogersen, I B.]]
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[[Category: Uson I]]
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[[Category: Uson, I.]]
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[[Category: Wawrzonek K]]
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[[Category: Wawrzonek, K.]]
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[[Category: bacterial odontopathogen]]
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[[Category: cysteine protease]]
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[[Category: hydrolase]]
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[[Category: zymogen activation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:24:44 2008''
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Current revision

Structure of Prevotella intermedia prointerpain A fragment 39-359 (mutant C154A)

PDB ID 3bb7

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