3bba

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[[Image:3bba.gif|left|200px]]
 
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{{Structure
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==Structure of active wild-type Prevotella intermedia interpain A cysteine protease==
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|PDB= 3bba |SIZE=350|CAPTION= <scene name='initialview01'>3bba</scene>, resolution 3.20&Aring;
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<StructureSection load='3bba' size='340' side='right'caption='[[3bba]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[3bba]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Prevotella_intermedia Prevotella intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BBA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BBA FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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|GENE= PIN0048 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=28131 Prevotella intermedia])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bba OCA], [https://pdbe.org/3bba PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bba RCSB], [https://www.ebi.ac.uk/pdbsum/3bba PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bba ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=[[3bb7|3BB7]]
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bba OCA], [http://www.ebi.ac.uk/pdbsum/3bba PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bba RCSB]</span>
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[https://www.uniprot.org/uniprot/A9J7N5_PREIN A9J7N5_PREIN]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Structure of active wild-type Prevotella intermedia interpain A cysteine protease'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bb/3bba_consurf.spt"</scriptWhenChecked>
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==Overview==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bba ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
Prevotella intermedia is a major periodontopathogen contributing to human gingivitis and periodontitis. Such pathogens release proteases as virulence factors that cause deterrence of host defenses and tissue destruction. A new cysteine protease from the cysteine-histidine-dyad class, interpain A, was studied in its zymogenic and self-processed mature forms. The latter consists of a bivalved moiety made up by two subdomains. In the structure of a catalytic cysteine-to-alanine zymogen variant, the right subdomain interacts with an unusual prodomain, thus contributing to latency. Unlike the catalytic cysteine residue, already in its competent conformation in the zymogen, the catalytic histidine is swung out from its active conformation and trapped in a cage shaped by a backing helix, a zymogenic hairpin, and a latency flap in the zymogen. Dramatic rearrangement of up to 20A of these elements triggered by a tryptophan switch occurs during activation and accounts for a new activation mechanism for proteolytic enzymes. These findings can be extrapolated to related potentially pathogenic cysteine proteases such as Streprococcus pyogenes SpeB and Porphyromonas gingivalis periodontain.
Prevotella intermedia is a major periodontopathogen contributing to human gingivitis and periodontitis. Such pathogens release proteases as virulence factors that cause deterrence of host defenses and tissue destruction. A new cysteine protease from the cysteine-histidine-dyad class, interpain A, was studied in its zymogenic and self-processed mature forms. The latter consists of a bivalved moiety made up by two subdomains. In the structure of a catalytic cysteine-to-alanine zymogen variant, the right subdomain interacts with an unusual prodomain, thus contributing to latency. Unlike the catalytic cysteine residue, already in its competent conformation in the zymogen, the catalytic histidine is swung out from its active conformation and trapped in a cage shaped by a backing helix, a zymogenic hairpin, and a latency flap in the zymogen. Dramatic rearrangement of up to 20A of these elements triggered by a tryptophan switch occurs during activation and accounts for a new activation mechanism for proteolytic enzymes. These findings can be extrapolated to related potentially pathogenic cysteine proteases such as Streprococcus pyogenes SpeB and Porphyromonas gingivalis periodontain.
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==About this Structure==
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A new autocatalytic activation mechanism for cysteine proteases revealed by Prevotella intermedia interpain A.,Mallorqui-Fernandez N, Manandhar SP, Mallorqui-Fernandez G, Uson I, Wawrzonek K, Kantyka T, Sola M, Thogersen IB, Enghild JJ, Potempa J, Gomis-Ruth FX J Biol Chem. 2008 Feb 1;283(5):2871-82. Epub 2007 Nov 9. PMID:17993455<ref>PMID:17993455</ref>
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3BBA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Prevotella_intermedia Prevotella intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BBA OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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A New Autocatalytic Activation Mechanism for Cysteine Proteases Revealed by Prevotella intermedia Interpain A., Mallorqui-Fernandez N, Manandhar SP, Mallorqui-Fernandez G, Uson I, Wawrzonek K, Kantyka T, Sola M, Thogersen IB, Enghild JJ, Potempa J, Gomis-Ruth FX, J Biol Chem. 2008 Feb 1;283(5):2871-82. Epub 2007 Nov 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17993455 17993455]
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</div>
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<div class="pdbe-citations 3bba" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Prevotella intermedia]]
[[Category: Prevotella intermedia]]
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[[Category: Single protein]]
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[[Category: Enghild JJ]]
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[[Category: Enghild, J J.]]
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[[Category: Gomis-Ruth FX]]
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[[Category: Gomis-Ruth, F X.]]
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[[Category: Kantyka T]]
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[[Category: Kantyka, T.]]
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[[Category: Mallorqui-Fernandez G]]
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[[Category: Mallorqui-Fernandez, G.]]
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[[Category: Mallorqui-Fernandez N]]
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[[Category: Mallorqui-Fernandez, N.]]
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[[Category: Manandhar SP]]
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[[Category: Manandhar, S P.]]
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[[Category: Potempa J]]
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[[Category: Potempa, J.]]
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[[Category: Sola M]]
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[[Category: Sola, M.]]
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[[Category: Thogersen IB]]
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[[Category: Thogersen, I B.]]
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[[Category: Uson I]]
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[[Category: Uson, I.]]
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[[Category: Wawrzonek K]]
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[[Category: Wawrzonek, K.]]
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[[Category: cysteine protease]]
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[[Category: hydrolase]]
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[[Category: prevotella intermedia]]
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[[Category: zymogen activation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:24:51 2008''
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Current revision

Structure of active wild-type Prevotella intermedia interpain A cysteine protease

PDB ID 3bba

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