6imf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:46, 22 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of TOXIN/ANTITOXIN complex==
==Crystal structure of TOXIN/ANTITOXIN complex==
-
<StructureSection load='6imf' size='340' side='right' caption='[[6imf]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='6imf' size='340' side='right'caption='[[6imf]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6imf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Protobothrops_flavoviridis Protobothrops flavoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IMF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6imf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Protobothrops_flavoviridis Protobothrops flavoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IMF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6imf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6imf OCA], [http://pdbe.org/6imf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6imf RCSB], [http://www.ebi.ac.uk/pdbsum/6imf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6imf ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6imf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6imf OCA], [https://pdbe.org/6imf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6imf RCSB], [https://www.ebi.ac.uk/pdbsum/6imf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6imf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CRVP_PROFL CRVP_PROFL]] Blocks contraction of smooth muscle elicited by high potassium-induced depolarization (PubMed:12047379). May target voltage-gated calcium channels (Cav) on smooth muscle.<ref>PMID:12047379</ref> [[http://www.uniprot.org/uniprot/MSMB2_PROFL MSMB2_PROFL]] May serve as a self-defense protein against the toxic effects of the snake venom during accidental envenomation. Does not show inhibitory activity towards brevilysin H6.
+
[https://www.uniprot.org/uniprot/CRVP_PROFL CRVP_PROFL] Blocks contraction of smooth muscle elicited by high potassium-induced depolarization (PubMed:12047379). May target voltage-gated calcium channels (Cav) on smooth muscle.<ref>PMID:12047379</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Venomous snakes have endogenous proteins that neutralize the toxicity of their venom components. We previously identified five small serum proteins (SSP-1-SSP-5) from a highly venomous snake belonging to the family Viperidae as inhibitors of various toxins from snake venom. The endogenous inhibitors belong to the prostate secretory protein of 94 amino acids (PSP94) family. SSP-2 interacts with triflin, which is a member of the cysteine-rich secretory protein (CRISP) family that blocks smooth muscle contraction. However, the structural basis for the interaction and biological roles of these inhibitors is largely unknown. Here, we determined the crystal structure of the SSP-2-triflin complex at 2.3 A resolution. A concave region centrally located in the N-terminal domain of triflin is fully occupied by the terminal -strands of SSP-2. SSP-2 does not bind tightly to the C-terminal cysteine-rich domain of triflin; this domain is thought to be responsible for its channel-blocker function. Instead, the cysteine-rich domain is tilted 7.7 degrees upon binding to SSP-2, and the inhibitor appears to sterically hinder triflin binding to calcium channels. These results help explain how an endogenous inhibitor prevents the venomous protein from maintaining homeostasis in the host. Furthermore, this interaction also sheds light on the binding interface between the human homologues PSP94 and CRISP-3, which are upregulated in prostate and ovarian cancers.
 +
 
 +
Crystal structure of the complex between venom toxin and serum inhibitor from viperidae snake.,Shioi N, Tadokoro T, Shioi S, Okabe Y, Matsubara H, Kita S, Ose T, Kuroki K, Terada S, Maenaka K J Biol Chem. 2018 Nov 30. pii: RA118.006840. doi: 10.1074/jbc.RA118.006840. PMID:30504218<ref>PMID:30504218</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6imf" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Protobothrops flavoviridis]]
[[Category: Protobothrops flavoviridis]]
-
[[Category: Hu, Y]]
+
[[Category: Hu Y]]
-
[[Category: Kita, S]]
+
[[Category: Kita S]]
-
[[Category: Kurahara, L H]]
+
[[Category: Kurahara LH]]
-
[[Category: Kuroki, K]]
+
[[Category: Kuroki K]]
-
[[Category: Maenaka, K]]
+
[[Category: Maenaka K]]
-
[[Category: Matsubara, H]]
+
[[Category: Matsubara H]]
-
[[Category: Okabe, Y]]
+
[[Category: Okabe Y]]
-
[[Category: Ose, T]]
+
[[Category: Ose T]]
-
[[Category: Shioi, N]]
+
[[Category: Shioi N]]
-
[[Category: Shioi, S]]
+
[[Category: Shioi S]]
-
[[Category: Tadokoro, T]]
+
[[Category: Tadokoro T]]
-
[[Category: Terada, S]]
+
[[Category: Terada S]]
-
[[Category: Antitoxin]]
+
-
[[Category: Complex]]
+
-
[[Category: Toxin]]
+
-
[[Category: Toxin-antitoxin complex]]
+

Current revision

Crystal structure of TOXIN/ANTITOXIN complex

PDB ID 6imf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools