3bwd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:17, 30 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bwd.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the plant Rho protein ROP5==
-
|PDB= 3bwd |SIZE=350|CAPTION= <scene name='initialview01'>3bwd</scene>, resolution 1.53&Aring;
+
<StructureSection load='3bwd' size='340' side='right'caption='[[3bwd]], [[Resolution|resolution]] 1.53&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+D+181'>AC1</scene> and <scene name='pdbsite=AC2:Gdp+Binding+Site+For+Residue+D+200'>AC2</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GDP:GUANOSINE-5&#39;-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
+
<table><tr><td colspan='2'>[[3bwd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWD FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.53&#8491;</td></tr>
-
|GENE= ARAC6, RAC2, ROP5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwd OCA], [https://pdbe.org/3bwd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwd RCSB], [https://www.ebi.ac.uk/pdbsum/3bwd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwd ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[2ntx|2NTX]], [[2nty|2NTY]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwd OCA], [http://www.ebi.ac.uk/pdbsum/3bwd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bwd RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/RAC6_ARATH RAC6_ARATH] May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.<ref>PMID:10209027</ref> <ref>PMID:9765526</ref> Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity).<ref>PMID:10209027</ref> <ref>PMID:9765526</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bwd ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of the plant Rho protein ROP5'''
+
==See Also==
-
 
+
*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]]
-
 
+
== References ==
-
==Overview==
+
<references/>
-
The small G protein ROP5 from the model plant Arabidopsis thaliana was purified and crystallized using the hanging-drop vapour-diffusion method. ROP5 crystals were obtained using PEG 3000 as precipitant and belong to space group P2(1). A data set was collected to 1.53 A resolution using synchrotron radiation at 100 K. A clear molecular-replacement solution was found using ROP4-GDP of the ROP4-GDP-PRONE8 complex as the search model.
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
3BWD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWD OCA].
+
-
 
+
-
==Reference==
+
-
Purification, crystallization and preliminary X-ray diffraction analysis of the plant Rho protein ROP5., Thomas C, Berken A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt, 12):1070-2. Epub 2007 Nov 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18084097 18084097]
+
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Berken, A.]]
+
[[Category: Berken A]]
-
[[Category: Thomas, C.]]
+
[[Category: Thomas C]]
-
[[Category: cytoplasm]]
+
-
[[Category: g domain]]
+
-
[[Category: gtp-binding]]
+
-
[[Category: lipoprotein]]
+
-
[[Category: membrane]]
+
-
[[Category: methylation]]
+
-
[[Category: nucleotide-binding]]
+
-
[[Category: plant protein]]
+
-
[[Category: prenylation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:29:19 2008''
+

Current revision

Crystal structure of the plant Rho protein ROP5

PDB ID 3bwd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bwd"
Personal tools