3bwg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:50, 30 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bwg.jpg|left|200px]]
 
-
{{Structure
+
==The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168==
-
|PDB= 3bwg |SIZE=350|CAPTION= <scene name='initialview01'>3bwg</scene>, resolution 2.09&Aring;
+
<StructureSection load='3bwg' size='340' side='right'caption='[[3bwg]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[3bwg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWG FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-
|GENE= yydK, BSU40130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 Bacillus subtilis subsp. subtilis str. 168])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwg OCA], [https://pdbe.org/3bwg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwg RCSB], [https://www.ebi.ac.uk/pdbsum/3bwg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwg ProSAT], [https://www.topsan.org/Proteins/MCSG/3bwg TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwg OCA], [http://www.ebi.ac.uk/pdbsum/3bwg PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bwg RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/YYDK_BACSU YYDK_BACSU]
-
 
+
== Evolutionary Conservation ==
-
'''The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwg_consurf.spt"</scriptWhenChecked>
-
3BWG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWG OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bwg ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Abdullah, J.]]
+
[[Category: Abdullah J]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Tan K]]
-
[[Category: Tan, K.]]
+
[[Category: Zhou M]]
-
[[Category: Zhou, M.]]
+
-
[[Category: apc85486]]
+
-
[[Category: dna-binding]]
+
-
[[Category: mcsg]]
+
-
[[Category: midwest center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transcription regulation]]
+
-
[[Category: transcription regulator]]
+
-
[[Category: transcriptional regulator]]
+
-
[[Category: yydk]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:29:21 2008''
+

Current revision

The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168

PDB ID 3bwg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools