This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c07

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:38, 27 January 2022) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c07.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of a TetR family transcriptional regulator from Streptomyces coelicolor A3(2)==
-
|PDB= 3c07 |SIZE=350|CAPTION= <scene name='initialview01'>3c07</scene>, resolution 2.70&Aring;
+
<StructureSection load='3c07' size='340' side='right'caption='[[3c07]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+252'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+253'>AC2</scene> and <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+B+252'>AC3</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[3c07]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Strco Strco]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2ofl 2ofl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C07 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|GENE= SCO4850, SC5G8.18c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCO4850, SC5G8.18c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>
-
|RELATEDENTRY=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c07 OCA], [https://pdbe.org/3c07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c07 RCSB], [https://www.ebi.ac.uk/pdbsum/3c07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c07 ProSAT], [https://www.topsan.org/Proteins/MCSG/3c07 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c07 OCA], [http://www.ebi.ac.uk/pdbsum/3c07 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c07 RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of a TetR family transcriptional regulator from Streptomyces coelicolor A3(2)'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c0/3c07_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3C07 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. This structure supersedes the now removed PDB entry 2OFL. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C07 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bacteria]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c07 ConSurf].
-
[[Category: Edwards, A M.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: Tan, K.]]
+
[[Category: Strco]]
-
[[Category: Xu, X.]]
+
[[Category: Edwards, A M]]
-
[[Category: Zheng, H.]]
+
[[Category: Joachimiak, A]]
-
[[Category: apc6322]]
+
[[Category: Structural genomic]]
-
[[Category: dna-binding]]
+
[[Category: Savchenko, A]]
-
[[Category: mcsg]]
+
[[Category: Tan, K]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Xu, X]]
-
[[Category: protein structure initiative]]
+
[[Category: Zheng, H]]
-
[[Category: psi-2]]
+
[[Category: Apc6322]]
-
[[Category: streptomyces coelicolor a3(2)]]
+
[[Category: Dna-binding]]
-
[[Category: structural genomic]]
+
[[Category: Mcsg]]
-
[[Category: tetr]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: transcription]]
+
[[Category: Tetr]]
-
[[Category: transcription regulation]]
+
[[Category: Transcription]]
-
[[Category: transcription regulator]]
+
[[Category: Transcription regulation]]
-
 
+
[[Category: Transcription regulator]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:30:00 2008''
+

Current revision

Crystal structure of a TetR family transcriptional regulator from Streptomyces coelicolor A3(2)

PDB ID 3c07

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3c07"
Personal tools