3c25

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:32, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c25.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure of NotI Restriction Endonuclease Bound to Cognate DNA==
-
|PDB= 3c25 |SIZE=350|CAPTION= <scene name='initialview01'>3c25</scene>, resolution 2.500&Aring;
+
<StructureSection load='3c25' size='340' side='right'caption='[[3c25]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>
+
<table><tr><td colspan='2'>[[3c25]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nocardia_otitidiscaviarum Nocardia otitidiscaviarum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3bvr 3bvr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C25 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C25 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
|GENE= notIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1823 Nocardia otitidiscaviarum])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c25 OCA], [https://pdbe.org/3c25 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c25 RCSB], [https://www.ebi.ac.uk/pdbsum/3c25 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c25 ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[3bvq|3BVQ]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c25 OCA], [http://www.ebi.ac.uk/pdbsum/3c25 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c25 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q2I6W2_9NOCA Q2I6W2_9NOCA]
-
'''Crystal Structure of NotI Restriction Endonuclease Bound to Cognate DNA'''
+
==See Also==
-
 
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3C25 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Nocardia_otitidiscaviarum Nocardia otitidiscaviarum]. This structure supersedes the now removed PDB entry 3BVR. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C25 OCA].
+
[[Category: Large Structures]]
[[Category: Nocardia otitidiscaviarum]]
[[Category: Nocardia otitidiscaviarum]]
-
[[Category: Protein complex]]
+
[[Category: Lambert AR]]
-
[[Category: Lambert, A R.]]
+
[[Category: Shen B]]
-
[[Category: Shen, B.]]
+
[[Category: Stoddard BL]]
-
[[Category: Stoddard, B L.]]
+
[[Category: Sussman D]]
-
[[Category: Sussman, D.]]
+
-
[[Category: fe-cys4 motif]]
+
-
[[Category: hydrolase/dna complex]]
+
-
[[Category: iron-sulfur protein]]
+
-
[[Category: pd-(d/e)-xk]]
+
-
[[Category: protein-dna complex]]
+
-
[[Category: rare-cutting]]
+
-
[[Category: restriction endonuclease]]
+
-
[[Category: restriction enzyme fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:30:16 2008''
+

Current revision

Crystal Structure of NotI Restriction Endonuclease Bound to Cognate DNA

PDB ID 3c25

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools