3c5y

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[[Image:3c5y.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of a putative ribose 5-phosphate isomerase (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 A resolution==
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|PDB= 3c5y |SIZE=350|CAPTION= <scene name='initialview01'>3c5y</scene>, resolution 1.810&Aring;
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<StructureSection load='3c5y' size='340' side='right'caption='[[3c5y]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:No3+Binding+Site+For+Residue+F+213'>AC1</scene>, <scene name='pdbsite=AC2:No3+Binding+Site+For+Residue+F+214'>AC2</scene>, <scene name='pdbsite=AC3:No3+Binding+Site+For+Residue+I+213'>AC3</scene>, <scene name='pdbsite=AC4:No3+Binding+Site+For+Residue+G+213'>AC4</scene>, <scene name='pdbsite=AC5:No3+Binding+Site+For+Residue+G+214'>AC5</scene>, <scene name='pdbsite=AC6:No3+Binding+Site+For+Residue+F+215'>AC6</scene>, <scene name='pdbsite=AC7:No3+Binding+Site+For+Residue+F+216'>AC7</scene>, <scene name='pdbsite=AC8:No3+Binding+Site+For+Residue+P+213'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+H+213'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+B+213'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+K+213'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+G+215'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+E+213'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+I+214'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+L+213'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+J+213'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+N+213'>BC8</scene>, <scene name='pdbsite=BC9:Edo+Binding+Site+For+Residue+A+213'>BC9</scene>, <scene name='pdbsite=CC1:Edo+Binding+Site+For+Residue+E+214'>CC1</scene>, <scene name='pdbsite=CC2:Edo+Binding+Site+For+Residue+G+216'>CC2</scene>, <scene name='pdbsite=CC3:Edo+Binding+Site+For+Residue+F+217'>CC3</scene>, <scene name='pdbsite=CC4:Edo+Binding+Site+For+Residue+F+218'>CC4</scene>, <scene name='pdbsite=CC5:Edo+Binding+Site+For+Residue+C+213'>CC5</scene>, <scene name='pdbsite=CC6:Edo+Binding+Site+For+Residue+M+213'>CC6</scene>, <scene name='pdbsite=CC7:Edo+Binding+Site+For+Residue+D+213'>CC7</scene>, <scene name='pdbsite=CC8:Edo+Binding+Site+For+Residue+B+214'>CC8</scene>, <scene name='pdbsite=CC9:Edo+Binding+Site+For+Residue+B+215'>CC9</scene>, <scene name='pdbsite=DC1:Edo+Binding+Site+For+Residue+A+214'>DC1</scene>, <scene name='pdbsite=DC2:Edo+Binding+Site+For+Residue+B+216'>DC2</scene>, <scene name='pdbsite=DC3:Edo+Binding+Site+For+Residue+B+217'>DC3</scene>, <scene name='pdbsite=DC4:Edo+Binding+Site+For+Residue+P+214'>DC4</scene>, <scene name='pdbsite=DC5:Edo+Binding+Site+For+Residue+E+215'>DC5</scene>, <scene name='pdbsite=DC6:Edo+Binding+Site+For+Residue+I+215'>DC6</scene>, <scene name='pdbsite=DC7:Edo+Binding+Site+For+Residue+J+214'>DC7</scene>, <scene name='pdbsite=DC8:Edo+Binding+Site+For+Residue+A+215'>DC8</scene>, <scene name='pdbsite=DC9:Edo+Binding+Site+For+Residue+G+217'>DC9</scene>, <scene name='pdbsite=EC1:Edo+Binding+Site+For+Residue+H+214'>EC1</scene>, <scene name='pdbsite=EC2:Edo+Binding+Site+For+Residue+H+215'>EC2</scene>, <scene name='pdbsite=EC3:Edo+Binding+Site+For+Residue+K+214'>EC3</scene>, <scene name='pdbsite=EC4:Edo+Binding+Site+For+Residue+G+218'>EC4</scene>, <scene name='pdbsite=EC5:Edo+Binding+Site+For+Residue+G+219'>EC5</scene>, <scene name='pdbsite=EC6:Edo+Binding+Site+For+Residue+H+216'>EC6</scene>, <scene name='pdbsite=EC7:Edo+Binding+Site+For+Residue+A+216'>EC7</scene>, <scene name='pdbsite=EC8:Edo+Binding+Site+For+Residue+D+214'>EC8</scene>, <scene name='pdbsite=EC9:Edo+Binding+Site+For+Residue+K+215'>EC9</scene>, <scene name='pdbsite=FC1:Edo+Binding+Site+For+Residue+H+217'>FC1</scene>, <scene name='pdbsite=FC2:Edo+Binding+Site+For+Residue+M+214'>FC2</scene>, <scene name='pdbsite=FC3:Edo+Binding+Site+For+Residue+I+216'>FC3</scene>, <scene name='pdbsite=FC4:Edo+Binding+Site+For+Residue+A+217'>FC4</scene>, <scene name='pdbsite=FC5:Edo+Binding+Site+For+Residue+M+215'>FC5</scene>, <scene name='pdbsite=FC6:Edo+Binding+Site+For+Residue+I+217'>FC6</scene>, <scene name='pdbsite=FC7:Edo+Binding+Site+For+Residue+A+218'>FC7</scene>, <scene name='pdbsite=FC8:Edo+Binding+Site+For+Residue+G+220'>FC8</scene>, <scene name='pdbsite=FC9:Edo+Binding+Site+For+Residue+F+219'>FC9</scene>, <scene name='pdbsite=GC1:Edo+Binding+Site+For+Residue+N+214'>GC1</scene>, <scene name='pdbsite=GC2:Edo+Binding+Site+For+Residue+J+215'>GC2</scene>, <scene name='pdbsite=GC3:Edo+Binding+Site+For+Residue+F+220'>GC3</scene>, <scene name='pdbsite=GC4:Edo+Binding+Site+For+Residue+E+216'>GC4</scene>, <scene name='pdbsite=GC5:Edo+Binding+Site+For+Residue+H+218'>GC5</scene>, <scene name='pdbsite=GC6:Edo+Binding+Site+For+Residue+A+219'>GC6</scene>, <scene name='pdbsite=GC7:Edo+Binding+Site+For+Residue+M+216'>GC7</scene>, <scene name='pdbsite=GC8:Edo+Binding+Site+For+Residue+A+220'>GC8</scene>, <scene name='pdbsite=GC9:Edo+Binding+Site+For+Residue+F+221'>GC9</scene>, <scene name='pdbsite=HC1:Edo+Binding+Site+For+Residue+C+214'>HC1</scene>, <scene name='pdbsite=HC2:Edo+Binding+Site+For+Residue+F+222'>HC2</scene>, <scene name='pdbsite=HC3:Edo+Binding+Site+For+Residue+N+215'>HC3</scene>, <scene name='pdbsite=HC4:Edo+Binding+Site+For+Residue+E+217'>HC4</scene>, <scene name='pdbsite=HC5:Edo+Binding+Site+For+Residue+G+221'>HC5</scene> and <scene name='pdbsite=HC6:Edo+Binding+Site+For+Residue+B+218'>HC6</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CSW:CYSTEINE-S-DIOXIDE'>CSW</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>
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<table><tr><td colspan='2'>[[3c5y]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_DSM_12444 Novosphingobium aromaticivorans DSM 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5Y FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
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|GENE= YP_001165900.1, Saro_3514 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=279238 Novosphingobium aromaticivorans DSM 12444])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5y OCA], [https://pdbe.org/3c5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5y RCSB], [https://www.ebi.ac.uk/pdbsum/3c5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5y ProSAT], [https://www.topsan.org/Proteins/JCSG/3c5y TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5y OCA], [http://www.ebi.ac.uk/pdbsum/3c5y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c5y RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/A4XEL3_NOVAD A4XEL3_NOVAD]
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== Evolutionary Conservation ==
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'''Crystal structure of putative ribose 5-phosphate isomerase (YP_001165900.1) from Novosphingobium aromaticivorans DSM 12444 at 1.81 A resolution'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5y_consurf.spt"</scriptWhenChecked>
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3C5Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5Y OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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[[Category: Novosphingobium aromaticivorans dsm 12444]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Single protein]]
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</jmolCheckbox>
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[[Category: JCSG, Joint Center for Structural Genomics.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5y ConSurf].
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[[Category: jcsg]]
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<div style="clear:both"></div>
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[[Category: joint center for structural genomic]]
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__TOC__
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[[Category: plasmid]]
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</StructureSection>
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[[Category: protein structure initiative]]
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[[Category: Large Structures]]
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[[Category: psi-2]]
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[[Category: Novosphingobium aromaticivorans DSM 12444]]
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[[Category: putative ribose 5-phosphate isomerase]]
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[[Category: structural genomic]]
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[[Category: unknown function]]
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[[Category: yp_001165900 1]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:30:50 2008''
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Current revision

Crystal structure of a putative ribose 5-phosphate isomerase (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 A resolution

PDB ID 3c5y

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