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3c85

From Proteopedia

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[[Image:3c85.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of TrkA domain of putative glutathione-regulated potassium-efflux KefB from Vibrio parahaemolyticus==
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|PDB= 3c85 |SIZE=350|CAPTION= <scene name='initialview01'>3c85</scene>, resolution 1.90&Aring;
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<StructureSection load='3c85' size='340' side='right'caption='[[3c85]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+180'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+180'>AC2</scene> and <scene name='pdbsite=AC3:Amp+Binding+Site+For+Residue+C+180'>AC3</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[3c85]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C85 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C85 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= VP0827 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP0827 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c85 OCA], [https://pdbe.org/3c85 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c85 RCSB], [https://www.ebi.ac.uk/pdbsum/3c85 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c85 ProSAT], [https://www.topsan.org/Proteins/MCSG/3c85 TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c85 OCA], [http://www.ebi.ac.uk/pdbsum/3c85 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c85 RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of TrkA domain of putative glutathione-regulated potassium-efflux KefB from Vibrio parahaemolyticus'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c85_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3C85 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C85 OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Single protein]]
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</jmolCheckbox>
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[[Category: Vibrio parahaemolyticus rimd 2210633]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c85 ConSurf].
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[[Category: Abdullah, J.]]
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<div style="clear:both"></div>
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[[Category: Joachimiak, A.]]
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__TOC__
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</StructureSection>
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[[Category: Wu, R.]]
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[[Category: Large Structures]]
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[[Category: mcsg]]
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[[Category: Vibpa]]
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[[Category: midwest center for structural genomic]]
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[[Category: Abdullah, J]]
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[[Category: protein structure initiative]]
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[[Category: Joachimiak, A]]
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[[Category: psi-2]]
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[[Category: Structural genomic]]
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[[Category: putative glutathione-regulated potassium-efflux kefb]]
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[[Category: Wu, R]]
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[[Category: structural genomic]]
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[[Category: Mcsg]]
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[[Category: transmembrane]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: transport]]
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[[Category: Putative glutathione-regulated potassium-efflux kefb]]
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[[Category: transport protein]]
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[[Category: Transmembrane]]
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[[Category: trka domain]]
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[[Category: Transport]]
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[[Category: vibrio parahaemolyticus]]
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[[Category: Transport protein]]
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[[Category: Trka domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:31:00 2008''
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[[Category: Vibrio parahaemolyticus]]

Current revision

Crystal structure of TrkA domain of putative glutathione-regulated potassium-efflux KefB from Vibrio parahaemolyticus

PDB ID 3c85

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