6q8k

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(New page: '''Unreleased structure''' The entry 6q8k is ON HOLD Authors: Schroeder, M., Arrowsmith, C.H., Edwards, A.M., Knapp, S., Structural Genomics Consortium (SGC) Description: CLK1 with bou...)
Current revision (16:09, 27 February 2019) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6q8k is ON HOLD
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==CLK1 with bound pyridoquinazoline==
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<StructureSection load='6q8k' size='340' side='right' caption='[[6q8k]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6q8k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Q8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6Q8K FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FG9:~{N}2-(3-morpholin-4-ylpropyl)pyrido[3,4-g]quinazoline-2,10-diamine'>FG9</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CLK1, CLK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dual-specificity_kinase Dual-specificity kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.12.1 2.7.12.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6q8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q8k OCA], [http://pdbe.org/6q8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6q8k RCSB], [http://www.ebi.ac.uk/pdbsum/6q8k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6q8k ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/CLK1_HUMAN CLK1_HUMAN]] Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates: SRSF1, SRSF3 and PTPN1. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells and adenovirus E1A pre-mRNA.<ref>PMID:10480872</ref> <ref>PMID:19168442</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cdc2-like kinase 1 (CLK1) and dual specificity tyrosine phosphorylation-regulated kinase 1A (DYRK1A) are involved in the regulation of alternative pre-mRNA splicing. Dysregulation of this process has been linked to cancer progression and neurodegenerative diseases, making CLK1 and DYRK1A important therapeutic targets. Here we describe the synthesis of new pyrido[3,4-g]quinazoline derivatives and the evaluation of the inhibitory potencies of these compounds toward CDK5, CK1, GSK3, CLK1 and DYRK1A. Introduction of aminoalkylamino groups at the 2-position resulted in several compounds with low nanomolar affinity and selective inhibition of CLK1 and/or DYRK1A. Their evaluation on several immortalized or cancerous cell lines showed varying degree of cell viability reduction. Co-crystal structures of CLK1 with two of the most potent compounds revealed two alternative binding modes of the pyrido[3,4-g]quinazoline scaffold that can be exploited for future inhibitor design.
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Authors: Schroeder, M., Arrowsmith, C.H., Edwards, A.M., Knapp, S., Structural Genomics Consortium (SGC)
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New pyrido[3,4-g]quinazoline derivatives as CLK1 and DYRK1A inhibitors: synthesis, biological evaluation and binding mode analysis.,Tazarki H, Zeinyeh W, Esvan YJ, Knapp S, Chatterjee D, Schroder M, Joerger AC, Khiari J, Josselin B, Baratte B, Bach S, Ruchaud S, Anizon F, Giraud F, Moreau P Eur J Med Chem. 2019 Jan 26;166:304-317. doi: 10.1016/j.ejmech.2019.01.052. PMID:30731399<ref>PMID:30731399</ref>
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Description: CLK1 with bound pyridoquinazoline
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6q8k" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Dual-specificity kinase]]
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[[Category: Human]]
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[[Category: Anizon, F]]
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[[Category: Arrowsmith, C H]]
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[[Category: Bach, S]]
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[[Category: Bountra, C]]
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[[Category: Edwards, A M]]
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[[Category: Esvan, Y J]]
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[[Category: Giraud, F]]
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[[Category: Joesselin, B]]
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[[Category: Khiari, J]]
[[Category: Knapp, S]]
[[Category: Knapp, S]]
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[[Category: Edwards, A.M]]
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[[Category: Moreau, P]]
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[[Category: Arrowsmith, C.H]]
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[[Category: Ruchaud, S]]
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[[Category: Structural Genomics Consortium (Sgc)]]
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[[Category: Structural genomic]]
[[Category: Schroeder, M]]
[[Category: Schroeder, M]]
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[[Category: Tazarki, H]]
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[[Category: Zeinyeh, W]]
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[[Category: Clk1]]
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[[Category: Dual specifity protein kinase clk1]]
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[[Category: Inhibitor]]
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[[Category: Kinase]]
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[[Category: Sgc]]
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[[Category: Transferase]]

Current revision

CLK1 with bound pyridoquinazoline

6q8k, resolution 2.29Å

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