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| - | [[Image:3cc1.jpg|left|200px]] | |
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| - | {{Structure
| + | ==CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-N-ACETYLGALACTOSAMINIDASE (BH1870) FROM BACILLUS HALODURANS C-125 AT 2.00 A RESOLUTION== |
| - | |PDB= 3cc1 |SIZE=350|CAPTION= <scene name='initialview01'>3cc1</scene>, resolution 2.000Å
| + | <StructureSection load='3cc1' size='340' side='right'caption='[[3cc1]], [[Resolution|resolution]] 2.00Å' scene=''> |
| - | |SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+433'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+434'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+433'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+A+434'>AC4</scene>, <scene name='pdbsite=AC5:So4+Binding+Site+For+Residue+A+435'>AC5</scene>, <scene name='pdbsite=AC6:So4+Binding+Site+For+Residue+A+436'>AC6</scene>, <scene name='pdbsite=AC7:Imd+Binding+Site+For+Residue+A+437'>AC7</scene>, <scene name='pdbsite=AC8:Pge+Binding+Site+For+Residue+B+435'>AC8</scene>, <scene name='pdbsite=AC9:Pge+Binding+Site+For+Residue+B+436'>AC9</scene>, <scene name='pdbsite=BC1:Pge+Binding+Site+For+Residue+B+437'>BC1</scene>, <scene name='pdbsite=BC2:Pge+Binding+Site+For+Residue+A+438'>BC2</scene>, <scene name='pdbsite=BC3:Pge+Binding+Site+For+Residue+B+438'>BC3</scene>, <scene name='pdbsite=BC4:Pg4+Binding+Site+For+Residue+B+439'>BC4</scene>, <scene name='pdbsite=BC5:P33+Binding+Site+For+Residue+A+439'>BC5</scene>, <scene name='pdbsite=BC6:Gol+Binding+Site+For+Residue+A+440'>BC6</scene>, <scene name='pdbsite=BC7:Gol+Binding+Site+For+Residue+B+440'>BC7</scene>, <scene name='pdbsite=BC8:Gol+Binding+Site+For+Residue+B+441'>BC8</scene>, <scene name='pdbsite=BC9:Gol+Binding+Site+For+Residue+B+442'>BC9</scene>, <scene name='pdbsite=CC1:Gol+Binding+Site+For+Residue+A+441'>CC1</scene>, <scene name='pdbsite=CC2:Peg+Binding+Site+For+Residue+A+442'>CC2</scene>, <scene name='pdbsite=CC3:Peg+Binding+Site+For+Residue+B+444'>CC3</scene>, <scene name='pdbsite=CC4:Peg+Binding+Site+For+Residue+B+445'>CC4</scene>, <scene name='pdbsite=CC5:Peg+Binding+Site+For+Residue+A+443'>CC5</scene> and <scene name='pdbsite=CC6:Peg+Binding+Site+For+Residue+A+444'>CC6</scene>
| + | == Structural highlights == |
| - | |LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
| + | <table><tr><td colspan='2'>[[3cc1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CC1 FirstGlance]. <br> |
| - | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-N-acetylgalactosaminidase Alpha-N-acetylgalactosaminidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.49 3.2.1.49] </span>
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | |GENE= NP_242736.1, BH1870 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | |DOMAIN=
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cc1 OCA], [https://pdbe.org/3cc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cc1 RCSB], [https://www.ebi.ac.uk/pdbsum/3cc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cc1 ProSAT], [https://www.topsan.org/Proteins/JCSG/3cc1 TOPSAN]</span></td></tr> |
| - | |RELATEDENTRY=
| + | </table> |
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cc1 OCA], [http://www.ebi.ac.uk/pdbsum/3cc1 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cc1 RCSB]</span>
| + | == Function == |
| - | }}
| + | [https://www.uniprot.org/uniprot/Q9KBQ5_HALH5 Q9KBQ5_HALH5] |
| - | | + | == Evolutionary Conservation == |
| - | '''Crystal structure of putative alpha-N-acetylgalactosaminidase (NP_242736.1) from Bacillus halodurans at 2.00 A resolution'''
| + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | | + | Check<jmol> |
| - | | + | <jmolCheckbox> |
| - | ==About this Structure== | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3cc1_consurf.spt"</scriptWhenChecked> |
| - | 3CC1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CC1 OCA].
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| - | [[Category: Alpha-N-acetylgalactosaminidase]]
| + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Bacteria]]
| + | </jmolCheckbox> |
| - | [[Category: Single protein]]
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cc1 ConSurf]. |
| - | [[Category: JCSG, Joint Center for Structural Genomics.]] | + | <div style="clear:both"></div> |
| - | [[Category: hydrolase]]
| + | __TOC__ |
| - | [[Category: jcsg]]
| + | </StructureSection> |
| - | [[Category: joint center for structural genomic]]
| + | [[Category: Alkalihalobacillus halodurans C-125]] |
| - | [[Category: np_242736 1]]
| + | [[Category: Large Structures]] |
| - | [[Category: protein structure initiative]]
| + | |
| - | [[Category: psi-2]]
| + | |
| - | [[Category: putative alpha-n-acetylgalactosaminidase]] | + | |
| - | [[Category: structural genomic]]
| + | |
| - | | + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:31:43 2008''
| + | |
