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3ce9

From Proteopedia

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[[Image:3ce9.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==
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|PDB= 3ce9 |SIZE=350|CAPTION= <scene name='initialview01'>3ce9</scene>, resolution 2.370&Aring;
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<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+A+400'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+B+400'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Residue+C+400'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Residue+D+400'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+C+401'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+D+401'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+401'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+402'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+403'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+B+401'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+C+402'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+C+403'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+C+404'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+C+405'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+C+406'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+D+402'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+D+403'>BC8</scene>, <scene name='pdbsite=BC9:Edo+Binding+Site+For+Residue+D+404'>BC9</scene>, <scene name='pdbsite=CC1:Edo+Binding+Site+For+Residue+D+405'>CC1</scene>, <scene name='pdbsite=CC2:Peg+Binding+Site+For+Residue+A+404'>CC2</scene> and <scene name='pdbsite=CC3:Peg+Binding+Site+For+Residue+D+406'>CC3</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
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<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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|GENE= NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 Clostridium acetobutylicum ATCC 824])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [https://pdbe.org/3ce9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB]</span>
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[https://www.uniprot.org/uniprot/Q97IL4_CLOAB Q97IL4_CLOAB]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce9_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3CE9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Clostridium acetobutylicum atcc 824]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ce9 ConSurf].
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[[Category: JCSG, Joint Center for Structural Genomics.]]
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<div style="clear:both"></div>
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[[Category: 3-dehydroquinate synthase]]
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__TOC__
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[[Category: glycerol dehydrogenase]]
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</StructureSection>
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[[Category: jcsg]]
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[[Category: Clostridium acetobutylicum ATCC 824]]
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[[Category: joint center for structural genomic]]
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[[Category: Large Structures]]
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[[Category: np_348253 1]]
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[[Category: oxidoreductase]]
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[[Category: protein structure initiative]]
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[[Category: psi-2]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:31:53 2008''
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Current revision

Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution

PDB ID 3ce9

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