3cea

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:53, 30 October 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cea.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of myo-inositol 2-dehydrogenase (NP_786804.1) from Lactobacillus plantarum at 2.40 A resolution==
-
|PDB= 3cea |SIZE=350|CAPTION= <scene name='initialview01'>3cea</scene>, resolution 2.400&Aring;
+
<StructureSection load='3cea' size='340' side='right'caption='[[3cea]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Nad+Binding+Site+For+Residue+A+400'>AC1</scene>, <scene name='pdbsite=AC2:Nad+Binding+Site+For+Residue+B+400'>AC2</scene>, <scene name='pdbsite=AC3:Nad+Binding+Site+For+Residue+C+400'>AC3</scene>, <scene name='pdbsite=AC4:Nad+Binding+Site+For+Residue+D+400'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+D+401'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+C+401'>AC6</scene> and <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+D+402'>AC7</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>
+
<table><tr><td colspan='2'>[[3cea]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum_WCFS1 Lactiplantibacillus plantarum WCFS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CEA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CEA FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Inositol_2-dehydrogenase Inositol 2-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.18 1.1.1.18] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
|GENE= NP_786804.1, iolG1, lp_3605 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=220668 Lactobacillus plantarum WCFS1])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cea OCA], [https://pdbe.org/3cea PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cea RCSB], [https://www.ebi.ac.uk/pdbsum/3cea PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cea ProSAT], [https://www.topsan.org/Proteins/JCSG/3cea TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cea OCA], [http://www.ebi.ac.uk/pdbsum/3cea PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cea RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/F9ULF9_LACPL F9ULF9_LACPL]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of myo-inositol 2-dehydrogenase (NP_786804.1) from Lactobacillus plantarum at 2.40 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3cea_consurf.spt"</scriptWhenChecked>
-
3CEA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum_wcfs1 Lactobacillus plantarum wcfs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CEA OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Inositol 2-dehydrogenase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Lactobacillus plantarum wcfs1]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cea ConSurf].
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: jcsg]]
+
__TOC__
-
[[Category: joint center for structural genomic]]
+
</StructureSection>
-
[[Category: myo-inositol 2-dehydrogenase]]
+
[[Category: Lactiplantibacillus plantarum WCFS1]]
-
[[Category: nad-binding rossmann fold]]
+
[[Category: Large Structures]]
-
[[Category: np_786804 1]]
+
-
[[Category: oxidoreductase family]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:31:55 2008''
+

Current revision

Crystal structure of myo-inositol 2-dehydrogenase (NP_786804.1) from Lactobacillus plantarum at 2.40 A resolution

PDB ID 3cea

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cea"
Personal tools