3cje

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:54, 30 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cje.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of an osmc-like hydroperoxide resistance protein (jann_2040) from jannaschia sp. ccs1 at 1.70 A resolution==
-
|PDB= 3cje |SIZE=350|CAPTION= <scene name='initialview01'>3cje</scene>, resolution 1.700&Aring;
+
<StructureSection load='3cje' size='340' side='right'caption='[[3cje]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Residue+A+167'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+168'>AC2</scene>, <scene name='pdbsite=AC3:Gol+Binding+Site+For+Residue+A+169'>AC3</scene>, <scene name='pdbsite=AC4:Gol+Binding+Site+For+Residue+A+170'>AC4</scene>, <scene name='pdbsite=AC5:Gol+Binding+Site+For+Residue+A+171'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+A+172'>AC6</scene>, <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+A+173'>AC7</scene>, <scene name='pdbsite=AC8:Gol+Binding+Site+For+Residue+A+174'>AC8</scene> and <scene name='pdbsite=AC9:Gol+Binding+Site+For+Residue+A+175'>AC9</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+
<table><tr><td colspan='2'>[[3cje]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Jannaschia_sp._CCS1 Jannaschia sp. CCS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CJE FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE= YP_509982.1, Jann_2040 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290400 Jannaschia sp. CCS1])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02566 OsmC]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cje FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cje OCA], [https://pdbe.org/3cje PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cje RCSB], [https://www.ebi.ac.uk/pdbsum/3cje PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cje ProSAT], [https://www.topsan.org/Proteins/JCSG/3cje TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cje FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cje OCA], [http://www.ebi.ac.uk/pdbsum/3cje PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cje RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q28QQ5_JANSC Q28QQ5_JANSC]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of OsmC-like hydroperoxide resistance protein (YP_509982.1) from Jannaschia sp. CCS1 at 1.70 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cj/3cje_consurf.spt"</scriptWhenChecked>
-
3CJE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJE OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Jannaschia sp. ccs1]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cje ConSurf].
-
[[Category: jcsg]]
+
<div style="clear:both"></div>
-
[[Category: joint center for structural genomic]]
+
__TOC__
-
[[Category: osmc-like hydroperoxide resistance protein]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Jannaschia sp. CCS1]]
-
[[Category: psi-2]]
+
[[Category: Large Structures]]
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
[[Category: yp_509982 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:32:25 2008''
+

Current revision

Crystal structure of an osmc-like hydroperoxide resistance protein (jann_2040) from jannaschia sp. ccs1 at 1.70 A resolution

PDB ID 3cje

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cje"
Personal tools