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3cle

From Proteopedia

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[[Image:3cle.jpg|left|200px]]
 
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{{Structure
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==HIV neutralizing monoclonal antibody YZ23==
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|PDB= 3cle |SIZE=350|CAPTION= <scene name='initialview01'>3cle</scene>, resolution 2.5&Aring;
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<StructureSection load='3cle' size='340' side='right'caption='[[3cle]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[3cle]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CLE FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cle OCA], [https://pdbe.org/3cle PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cle RCSB], [https://www.ebi.ac.uk/pdbsum/3cle PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cle ProSAT]</span></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00099 IGv], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00098 IGc], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07686 V-set]</span>
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</table>
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|RELATEDENTRY=[[1kn2|1KN2]], [[3clf|3CLF]]
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== Evolutionary Conservation ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cle OCA], [http://www.ebi.ac.uk/pdbsum/3cle PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cle RCSB]</span>
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[[Image:Consurf_key_small.gif|200px|right]]
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}}
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cl/3cle_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cle ConSurf].
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<div style="clear:both"></div>
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'''HIV neutralizing monoclonal antibody YZ23'''
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==See Also==
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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3CLE is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLE OCA].
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Protein complex]]
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[[Category: Jin L]]
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[[Category: Jin, L.]]
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[[Category: Paul S]]
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[[Category: Paul, S.]]
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[[Category: Symersky J]]
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[[Category: Symersky, J.]]
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[[Category: hiv-1]]
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[[Category: immune system]]
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[[Category: monoclonal antibody]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:32:34 2008''
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Current revision

HIV neutralizing monoclonal antibody YZ23

PDB ID 3cle

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