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| | ==Crystal structure of vSET/SAH/H3 ternary complex== | | ==Crystal structure of vSET/SAH/H3 ternary complex== |
| - | <StructureSection load='3kmt' size='340' side='right' caption='[[3kmt]], [[Resolution|resolution]] 1.78Å' scene=''> | + | <StructureSection load='3kmt' size='340' side='right'caption='[[3kmt]], [[Resolution|resolution]] 1.78Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3kmt]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KMT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KMT FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3kmt]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Paramecium_bursaria_Chlorella_virus_1 Paramecium bursaria Chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KMT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KMT FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kma|3kma]], [[3kmj|3kmj]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kmt OCA], [https://pdbe.org/3kmt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kmt RCSB], [https://www.ebi.ac.uk/pdbsum/3kmt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kmt ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kmt OCA], [http://pdbe.org/3kmt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kmt RCSB], [http://www.ebi.ac.uk/pdbsum/3kmt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kmt ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/O41094_PBCV1 O41094_PBCV1] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Homo sapiens]] | | [[Category: Homo sapiens]] |
| - | [[Category: Paramecium bursaria chlorella virus 1]] | + | [[Category: Large Structures]] |
| - | [[Category: Wei, H]] | + | [[Category: Paramecium bursaria Chlorella virus 1]] |
| - | [[Category: Zhou, M M]] | + | [[Category: Wei H]] |
| - | [[Category: Set domain]]
| + | [[Category: Zhou MM]] |
| - | [[Category: Ternary complex]]
| + | |
| - | [[Category: Viral protein]]
| + | |
| Structural highlights
Function
O41094_PBCV1
Publication Abstract from PubMed
Histone modifications are regarded as the most indispensible phenomena in epigenetics. Of these modifications, lysine methylation is of the greatest complexity and importance as site- and state-specific lysine methylation exerts a plethora of effects on chromatin structure and gene transcription. Notably, paramecium bursaria chlorella viruses encode a conserved SET domain methyltransferase, termed vSET, that functions to suppress host transcription by methylating histone H3 at lysine 27 (H3K27), a mark for eukaryotic gene silencing. Unlike mammalian lysine methyltransferases (KMTs), vSET functions only as a dimer, but the underlying mechanism has remained elusive. In this study, we demonstrate that dimeric vSET operates with negative cooperativity between the two active sites and engages in H3K27 methylation one site at a time. New atomic structures of vSET in the free form and a ternary complex with S-adenosyl homocysteine and a histone H3 peptide and biochemical analyses reveal the molecular origin for the negative cooperativity and explain the substrate specificity of H3K27 methyltransferases. Our study suggests a "walking" mechanism, by which vSET acts all by itself to globally methylate host H3K27, which is accomplished by the mammalian EZH2 KMT only in the context of the Polycomb repressive complex.
Dimerization of a viral SET protein endows its function.,Wei H, Zhou MM Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18433-8. Epub 2010 Oct 11. PMID:20937900[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wei H, Zhou MM. Dimerization of a viral SET protein endows its function. Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18433-8. Epub 2010 Oct 11. PMID:20937900 doi:10.1073/pnas.1009911107
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