4ake

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[[Image:4ake.gif|left|200px]]
 
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{{Structure
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==ADENYLATE KINASE==
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|PDB= 4ake |SIZE=350|CAPTION= <scene name='initialview01'>4ake</scene>, resolution 2.2&Aring;
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<StructureSection load='4ake' size='340' side='right'caption='[[4ake]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[4ake]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AKE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AKE FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ake FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ake OCA], [https://pdbe.org/4ake PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ake RCSB], [https://www.ebi.ac.uk/pdbsum/4ake PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ake ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ake FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ake OCA], [http://www.ebi.ac.uk/pdbsum/4ake PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=4ake RCSB]</span>
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[https://www.uniprot.org/uniprot/KAD_ECOLI KAD_ECOLI] Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.[HAMAP-Rule:MF_00235]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/4ake_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=4ake ConSurf].
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<div style="clear:both"></div>
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'''ADENYLATE KINASE'''
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==See Also==
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*[[Adenylate kinase 3D structures|Adenylate kinase 3D structures]]
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__TOC__
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==Overview==
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</StructureSection>
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BACKGROUND: Adenylate kinases undergo large conformational changes during their catalytic cycle. Because these changes have been studied by comparison of structures from different species, which share approximately one-third of their residues, only rough descriptions have been possible to date. RESULTS: We have solved the structure of unligated adenylate kinase from Escherichia coli at 2.2 degree resolution and compared it with the high-resolution structure of the same enzyme ligated with an inhibitor mimicking both substrates, ATP and AMP. This comparison shows that, upon substrate binding, the enzyme increases its chain mobility in a region remote from the active center. As this region 'solidifies' again on substrate release, we propose that it serves as a 'counterweight' balancing the substrate binding energy. CONCLUSION: The comparison of two very different conformations of the same polypeptide chain revealed kinematic details of the catalytic cycle. Moreover, it indicated that there exists an energetic counterweight compensating the substrate binding energy required for specificity. This counterweight prevents the enzyme from dropping into a rate-reducing energy well along the reaction coordinate.
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==About this Structure==
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4AKE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AKE OCA].
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==Reference==
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Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding., Muller CW, Schlauderer GJ, Reinstein J, Schulz GE, Structure. 1996 Feb 15;4(2):147-56. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8805521 8805521]
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[[Category: Adenylate kinase]]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Schlauderer, G J.]]
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[[Category: Schlauderer GJ]]
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[[Category: Schulz, G E.]]
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[[Category: Schulz GE]]
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[[Category: atp:amp phosphotransferase]]
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[[Category: myokinase]]
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[[Category: nucleoside monophosphate kinase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:37:54 2008''
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Current revision

ADENYLATE KINASE

PDB ID 4ake

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