6qem

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'''Unreleased structure'''
 
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The entry 6qem is ON HOLD
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==E. coli DnaBC complex bound to ssDNA==
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<SX load='6qem' size='340' side='right' viewer='molstar' caption='[[6qem]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6qem]] is a 13 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QEM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6QEM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=08T:[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-TRIS(FLUORANYL)BERYLLIUM'>08T</scene>, <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dnaB, groP, grpA, b4052, JW4012 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), dnaC, dnaD, b4361, JW4325 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_helicase DNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.12 3.6.4.12] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6qem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qem OCA], [http://pdbe.org/6qem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qem RCSB], [http://www.ebi.ac.uk/pdbsum/6qem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qem ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/DNAB_ECOLI DNAB_ECOLI]] Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. [[http://www.uniprot.org/uniprot/DNAC_ECOLI DNAC_ECOLI]] This protein is required for chromosomal replication. It forms, in concert with DnaB protein and other prepriming proteins DnaT, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In cells, dedicated AAA+ ATPases deposit hexameric, ring-shaped helicases onto DNA to initiate chromosomal replication. To better understand the mechanisms by which helicase loading can occur, we used cryo-EM to determine sub-4-A-resolution structures of the E. coli DnaBDnaC helicaseloader complex with nucleotide in pre- and post-DNA engagement states. In the absence of DNA, six DnaC protomers latch onto and crack open a DnaB hexamer using an extended N-terminal domain, stabilizing this conformation through nucleotide-dependent ATPase interactions. Upon binding DNA, DnaC hydrolyzes ATP, allowing DnaB to isomerize into a topologically closed, pre-translocation state competent to bind primase. Our data show how DnaC opens the DnaB ring and represses the helicase prior to DNA binding and how DnaC ATPase activity is reciprocally regulated by DnaB and DNA. Comparative analyses reveal how the helicase loading mechanism of DnaC parallels and diverges from homologous AAA+ systems involved in DNA replication and transposition.
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Authors:
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Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.,Arias-Palomo E, Puri N, O'Shea Murray VL, Yan Q, Berger JM Mol Cell. 2019 Feb 16. pii: S1097-2765(19)30043-7. doi:, 10.1016/j.molcel.2019.01.023. PMID:30797687<ref>PMID:30797687</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6qem" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Helicase 3D structures|Helicase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</SX>
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[[Category: Bacillus coli migula 1895]]
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[[Category: DNA helicase]]
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[[Category: Large Structures]]
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[[Category: Arias-Palomo, E]]
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[[Category: Berger, J M]]
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[[Category: Murray, V L.O Shea]]
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[[Category: Puri, N]]
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[[Category: Yan, Q]]
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[[Category: Aaa+]]
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[[Category: Helicase]]
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[[Category: Helicase loader]]
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[[Category: Reca]]
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[[Category: Replication]]

Current revision

E. coli DnaBC complex bound to ssDNA

6qem, resolution 3.40Å

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