This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5nsf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:05, 22 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of AzuAla==
==Structure of AzuAla==
-
<StructureSection load='5nsf' size='340' side='right' caption='[[5nsf]], [[Resolution|resolution]] 2.43&Aring;' scene=''>
+
<StructureSection load='5nsf' size='340' side='right'caption='[[5nsf]], [[Resolution|resolution]] 2.43&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5nsf]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NSF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NSF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5nsf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NSF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NSF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=96Z:(2~{S})-2-azanyl-3-(2,6-dihydroazulen-1-yl)propanoic+acid'>96Z</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.426&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tyrosine--tRNA_ligase Tyrosine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.1 6.1.1.1] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=96Z:(2~{S})-2-azanyl-3-(2,6-dihydroazulen-1-yl)propanoic+acid'>96Z</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nsf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nsf OCA], [http://pdbe.org/5nsf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nsf RCSB], [http://www.ebi.ac.uk/pdbsum/5nsf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nsf ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nsf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nsf OCA], [https://pdbe.org/5nsf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nsf RCSB], [https://www.ebi.ac.uk/pdbsum/5nsf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nsf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SYY_METJA SYY_METJA]] Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).<ref>PMID:10585437</ref>
+
[https://www.uniprot.org/uniprot/SYY_METJA SYY_METJA] Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).<ref>PMID:10585437</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5nsf" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5nsf" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Tyrosine--tRNA ligase]]
+
[[Category: Large Structures]]
-
[[Category: Martins, B M]]
+
[[Category: Methanocaldococcus jannaschii DSM 2661]]
-
[[Category: Ligase]]
+
[[Category: Martins BM]]
-
[[Category: Nnca]]
+

Current revision

Structure of AzuAla

PDB ID 5nsf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools