This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5z8a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:26, 27 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of GenB1 from Micromonospora echinospora in complex with JI-20A and PLP (external aldimine)==
==Crystal structure of GenB1 from Micromonospora echinospora in complex with JI-20A and PLP (external aldimine)==
-
<StructureSection load='5z8a' size='340' side='right' caption='[[5z8a]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
+
<StructureSection load='5z8a' size='340' side='right'caption='[[5z8a]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5z8a]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z8A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z8A FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5z8a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Micromonospora_echinospora Micromonospora echinospora]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z8A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z8A FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=JIA:(2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol'>JIA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.398&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z8a OCA], [http://pdbe.org/5z8a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z8a RCSB], [http://www.ebi.ac.uk/pdbsum/5z8a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z8a ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JIA:(2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(aminomethyl)-3-azany+l-4,5-bis(oxidanyl)oxan-2-yl]oxy-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol'>JIA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z8a OCA], [https://pdbe.org/5z8a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z8a RCSB], [https://www.ebi.ac.uk/pdbsum/5z8a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z8a ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q70KD9_MICEC Q70KD9_MICEC]
 +
 +
==See Also==
 +
*[[Aminotransferase 3D structures|Aminotransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cha, S S]]
+
[[Category: Large Structures]]
-
[[Category: Hong, S K]]
+
[[Category: Micromonospora echinospora]]
-
[[Category: Aminotransferase]]
+
[[Category: Cha SS]]
-
[[Category: Plp-binding]]
+
[[Category: Hong SK]]
-
[[Category: Transferase]]
+

Current revision

Crystal structure of GenB1 from Micromonospora echinospora in complex with JI-20A and PLP (external aldimine)

PDB ID 5z8a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools