6qii

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(New page: '''Unreleased structure''' The entry 6qii is ON HOLD until Paper Publication Authors: Ilina, Y., Lorent, C., Katz, S., Jeoung, J.H., Shima, S., Horch, M., Zebger, I., Dobbek, H. Descri...)
Current revision (12:01, 24 January 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6qii is ON HOLD until Paper Publication
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==Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri==
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<StructureSection load='6qii' size='340' side='right'caption='[[6qii]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6qii]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_barkeri_MS Methanosarcina barkeri MS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QII FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=BU3:(R,R)-2,3-BUTANEDIOL'>BU3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NFU:FORMYL[BIS(HYDROCYANATO-1KAPPAC)]IRONNICKEL(FE-NI)'>NFU</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qii OCA], [https://pdbe.org/6qii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qii RCSB], [https://www.ebi.ac.uk/pdbsum/6qii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qii ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A0E3LP72_METBA A0A0E3LP72_METBA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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[NiFe] hydrogenases are complex model enzymes for the reversible cleavage of dihydrogen (H 2 ). However, structural determinants of efficient H 2 binding to their [NiFe] active site are not properly understood. Here, we present crystallographic and vibrational spectroscopic insights into the unexplored structure of the H 2 -binding [NiFe] intermediate. Using an F 420 -reducing [NiFe]-hydrogenase from Methanosarcina barkeri as a model enzyme, we show that the protein backbone provides a strained chelating scaffold that tunes the [NiFe] active site for efficient H 2 binding and conversion. The protein matrix also directs H 2 diffusion to the [NiFe] site via two gas channels and allows the distribution of electrons between functional protomers through a subunit-bridging FeS cluster. Our findings emphasize the relevance of an atypical Ni coordination, thereby providing a blueprint for the design of bio-inspired H 2 conversion catalysts.
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Authors: Ilina, Y., Lorent, C., Katz, S., Jeoung, J.H., Shima, S., Horch, M., Zebger, I., Dobbek, H.
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X-ray Crystallography and Vibrational Spectroscopy Reveal Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] hydrogenases.,Ilina Y, Lorent C, Katz S, Jeoung JH, Shima S, Horch M, Zebger I, Dobbek H Angew Chem Int Ed Engl. 2019 Oct 7. doi: 10.1002/anie.201908258. PMID:31591784<ref>PMID:31591784</ref>
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Description: Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Dobbek, H]]
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<div class="pdbe-citations 6qii" style="background-color:#fffaf0;"></div>
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[[Category: Ilina, Y]]
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== References ==
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[[Category: Shima, S]]
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<references/>
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[[Category: Horch, M]]
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__TOC__
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[[Category: Jeoung, J.H]]
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</StructureSection>
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[[Category: Katz, S]]
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[[Category: Large Structures]]
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[[Category: Zebger, I]]
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[[Category: Methanosarcina barkeri MS]]
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[[Category: Lorent, C]]
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[[Category: Dobbek H]]
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[[Category: Horch M]]
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[[Category: Ilina Y]]
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[[Category: Jeoung JH]]
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[[Category: Katz S]]
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[[Category: Lorent C]]
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[[Category: Shima S]]
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[[Category: Zebger I]]

Current revision

Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri

PDB ID 6qii

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