This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6dym

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:37, 13 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==C-terminal condensation domain of Ebony==
==C-terminal condensation domain of Ebony==
-
<StructureSection load='6dym' size='340' side='right' caption='[[6dym]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
+
<StructureSection load='6dym' size='340' side='right'caption='[[6dym]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dym]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DYM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DYM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dym]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DYM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.02&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dym OCA], [http://pdbe.org/6dym PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dym RCSB], [http://www.ebi.ac.uk/pdbsum/6dym PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dym ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dym OCA], [https://pdbe.org/6dym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dym RCSB], [https://www.ebi.ac.uk/pdbsum/6dym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dym ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/EBO_DROME EBO_DROME] Nonribosomal peptide synthase which is required for the regulation of histamine and dopamine levels in various tissues through their condensation with beta-alanine (PubMed:12900414, PubMed:19715698, PubMed:25229196, PubMed:30705105). In epithelial glial cells, plays an essential role in the inactivation of histamine, the main neurotransmitter in the optical nerve system, by catalyzing the conversion of histamine into carcinine (PubMed:5782111, PubMed:12486147, PubMed:12900414, PubMed:25229196, PubMed:30705105). In the cuticle, catalyzes the condensation of beta-alanine with dopamine to form beta-alanyl-dopamine (NBAD), a metabolite involved in the pigmentation and sclerotization of the insect cuticle (PubMed:8580497, PubMed:11934851). Also, regulates the cuticular hydrocarbon composition in females (PubMed:31118901). Acts downstream of the body clock to regulate circadian behavioral rhythms (PubMed:17678856). Can also condense beta-alanine with biogenic amines tyramine, octopamine, and serotonin in vitro (PubMed:12900414, PubMed:19715698).<ref>PMID:11934851</ref> <ref>PMID:12486147</ref> <ref>PMID:12900414</ref> <ref>PMID:17678856</ref> <ref>PMID:19715698</ref> <ref>PMID:25229196</ref> <ref>PMID:30705105</ref> <ref>PMID:31118901</ref> <ref>PMID:5782111</ref> <ref>PMID:8580497</ref>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cryle, M J]]
+
[[Category: Drosophila melanogaster]]
-
[[Category: Hansen, M H]]
+
[[Category: Large Structures]]
-
[[Category: Izore, T]]
+
[[Category: Cryle MJ]]
-
[[Category: Jackson, C J]]
+
[[Category: Hansen MH]]
-
[[Category: Kaczmarski, J A]]
+
[[Category: Izore T]]
-
[[Category: Tailhades, J]]
+
[[Category: Jackson CJ]]
-
[[Category: Biosynthetic protein]]
+
[[Category: Kaczmarski JA]]
-
[[Category: Condensation domain]]
+
[[Category: Tailhades J]]
-
[[Category: Nrp]]
+
-
[[Category: Peptide-bond formation]]
+

Current revision

C-terminal condensation domain of Ebony

PDB ID 6dym

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools