This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Sandbox SBK
From Proteopedia
(Difference between revisions)
(New page: ==Structure of RXR DNA binding domain bound to a Human Mep DR1 Response element== <StructureSection load='6FBQ' size='340' side='right' caption='Caption for this structure' scene=''> Thi...) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Structure of RXR DNA binding domain bound to a Human Mep DR1 Response element== | ==Structure of RXR DNA binding domain bound to a Human Mep DR1 Response element== | ||
| - | <StructureSection load='6FBQ' size='340' side='right' caption='Caption for this structure' scene=''> | + | <StructureSection load='6FBQ' size='340' side='right' caption='Caption for this structure' scene='80/807431/Complex/1'> |
| - | + | The 6FBQ structure describes an homodimer of the DNA binding Domain (DBD) of Retidoid X Receptor bound to a Direct Repeat DR1 response element <ref>PMID 30476562</ref>. RXR belongs to the family of [https://en.wikipedia.org/wiki/Nuclear_receptor Nuclear Receptor]. The two RXR DBD bind to the half sites of sequence <scene name='80/807431/Pymol1/1'>GGGTCA</scene> and <scene name='80/807431/Pymol1/1'>AGTTCA</scene>. | |
| + | |||
| + | |||
| + | |||
| + | |||
| + | s a default text for your page '''Sandbox SBK'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
| Line 15: | Line 20: | ||
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
| + | |||
| + | This is how to insert a link to wikipedia | ||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> | ||
Current revision
Structure of RXR DNA binding domain bound to a Human Mep DR1 Response element
| |||||||||||
References
- ↑ Osz J, McEwen AG, Wolf J, Poussin-Courmontagne P, Peluso-Iltis C, Chebaro Y, Kieffer B, Rochel N. Modulation of RXR-DNA complex assembly by DNA context. Mol Cell Endocrinol. 2018 Nov 23. pii: S0303-7207(18)30340-X. doi:, 10.1016/j.mce.2018.11.008. PMID:30476562 doi:http://dx.doi.org/10.1016/j.mce.2018.11.008
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
