2eq9

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(New page: 200px {{Structure |PDB= 2eq9 |SIZE=350|CAPTION= <scene name='initialview01'>2eq9</scene>, resolution 2.09&Aring; |SITE= <scene name='pdbsite=AC1:Fad+Binding+Site+...)
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[[Image:2eq9.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdb==
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|PDB= 2eq9 |SIZE=350|CAPTION= <scene name='initialview01'>2eq9</scene>, resolution 2.09&Aring;
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<StructureSection load='2eq9' size='340' side='right'caption='[[2eq9]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Fad+Binding+Site+For+Residue+A+8482'>AC1</scene>, <scene name='pdbsite=AC2:Fad+Binding+Site+For+Residue+B+1482'>AC2</scene>, <scene name='pdbsite=AC3:Fad+Binding+Site+For+Residue+D+2482'>AC3</scene>, <scene name='pdbsite=AC4:Fad+Binding+Site+For+Residue+E+3482'>AC4</scene>, <scene name='pdbsite=AC5:Fad+Binding+Site+For+Residue+G+4482'>AC5</scene>, <scene name='pdbsite=AC6:Fad+Binding+Site+For+Residue+H+5482'>AC6</scene>, <scene name='pdbsite=AC7:Fad+Binding+Site+For+Residue+J+6482'>AC7</scene> and <scene name='pdbsite=AC8:Fad+Binding+Site+For+Residue+K+7482'>AC8</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>
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<table><tr><td colspan='2'>[[2eq9]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EQ9 FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydrolipoyl_dehydrogenase Dihydrolipoyl dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.4 1.8.1.4] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
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|GENE= TTHA0233 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus]), TTHA0232 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK06416 PRK06416], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02852 Pyr_redox_dim], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00070 Pyr_redox], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02817 E3_binding]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eq9 OCA], [https://pdbe.org/2eq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eq9 RCSB], [https://www.ebi.ac.uk/pdbsum/2eq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eq9 ProSAT], [https://www.topsan.org/Proteins/RSGI/2eq9 TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eq9 OCA], [http://www.ebi.ac.uk/pdbsum/2eq9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2eq9 RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/Q5SLR0_THET8 Q5SLR0_THET8]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/2eq9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eq9 ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdb'''
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==See Also==
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*[[Dihydrolipoamide acetyltransferase 3D structures|Dihydrolipoamide acetyltransferase 3D structures]]
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*[[Dihydrolipoamide dehydrogenase|Dihydrolipoamide dehydrogenase]]
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==About this Structure==
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__TOC__
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2EQ9 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQ9 OCA].
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</StructureSection>
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[[Category: Dihydrolipoyl dehydrogenase]]
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[[Category: Large Structures]]
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[[Category: Protein complex]]
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[[Category: Thermus thermophilus HB8]]
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[[Category: Thermus thermophilus]]
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[[Category: Kamiya N]]
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[[Category: Kamiya, N.]]
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[[Category: Nakai T]]
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[[Category: Nakai, T.]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: national project on protein structural and functional analyse]]
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[[Category: nppsfa]]
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[[Category: oxidoreductase]]
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[[Category: protein-protein complex]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 11:57:07 2008''
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Current revision

Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdb

PDB ID 2eq9

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