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3cjd

From Proteopedia

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(New page: 200px {{Structure |PDB= 3cjd |SIZE=350|CAPTION= <scene name='initialview01'>3cjd</scene>, resolution 1.790&Aring; |SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+...)
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[[Image:3cjd.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution==
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|PDB= 3cjd |SIZE=350|CAPTION= <scene name='initialview01'>3cjd</scene>, resolution 1.790&Aring;
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<StructureSection load='3cjd' size='340' side='right'caption='[[3cjd]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+A+202'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+B+202'>AC2</scene>, <scene name='pdbsite=AC3:Ste+Binding+Site+For+Residue+A+201'>AC3</scene> and <scene name='pdbsite=AC4:Ste+Binding+Site+For+Residue+A+203'>AC4</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=STE:STEARIC+ACID'>STE</scene>
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<table><tr><td colspan='2'>[[3cjd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Jannaschia_sp._CCS1 Jannaschia sp. CCS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CJD FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=STE:STEARIC+ACID'>STE</scene></td></tr>
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|GENE= YP_510936.1, Jann_2994 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290400 Jannaschia sp. CCS1])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cjd OCA], [https://pdbe.org/3cjd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cjd RCSB], [https://www.ebi.ac.uk/pdbsum/3cjd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cjd ProSAT], [https://www.topsan.org/Proteins/JCSG/3cjd TOPSAN]</span></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1309 AcrR], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00440 TetR_N]</span>
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cjd OCA], [http://www.ebi.ac.uk/pdbsum/3cjd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cjd RCSB]</span>
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[https://www.uniprot.org/uniprot/Q28N01_JANSC Q28N01_JANSC]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cj/3cjd_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3CJD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJD OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Jannaschia sp. ccs1]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cjd ConSurf].
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[[Category: JCSG, Joint Center for Structural Genomics.]]
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<div style="clear:both"></div>
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[[Category: dna-binding]]
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__TOC__
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[[Category: jcsg]]
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</StructureSection>
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[[Category: joint center for structural genomic]]
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[[Category: Jannaschia sp. CCS1]]
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[[Category: protein structure initiative]]
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[[Category: Large Structures]]
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[[Category: psi-2]]
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[[Category: putative tetr transcriptional regulator]]
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[[Category: structural genomic]]
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[[Category: transcription regulation]]
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[[Category: transcription regulator]]
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[[Category: yp_510936 1]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 12:00:12 2008''
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Current revision

Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution

PDB ID 3cjd

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