3cjd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px {{Structure |PDB= 3cjd |SIZE=350|CAPTION= <scene name='initialview01'>3cjd</scene>, resolution 1.790&Aring; |SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+...)
Current revision (11:30, 1 February 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cjd.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution==
-
|PDB= 3cjd |SIZE=350|CAPTION= <scene name='initialview01'>3cjd</scene>, resolution 1.790&Aring;
+
<StructureSection load='3cjd' size='340' side='right'caption='[[3cjd]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+A+202'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+B+202'>AC2</scene>, <scene name='pdbsite=AC3:Ste+Binding+Site+For+Residue+A+201'>AC3</scene> and <scene name='pdbsite=AC4:Ste+Binding+Site+For+Residue+A+203'>AC4</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=STE:STEARIC+ACID'>STE</scene>
+
<table><tr><td colspan='2'>[[3cjd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Jannaschia_sp._CCS1 Jannaschia sp. CCS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CJD FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=STE:STEARIC+ACID'>STE</scene></td></tr>
-
|GENE= YP_510936.1, Jann_2994 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290400 Jannaschia sp. CCS1])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cjd OCA], [https://pdbe.org/3cjd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cjd RCSB], [https://www.ebi.ac.uk/pdbsum/3cjd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cjd ProSAT], [https://www.topsan.org/Proteins/JCSG/3cjd TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1309 AcrR], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00440 TetR_N]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cjd OCA], [http://www.ebi.ac.uk/pdbsum/3cjd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cjd RCSB]</span>
+
[https://www.uniprot.org/uniprot/Q28N01_JANSC Q28N01_JANSC]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cj/3cjd_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3CJD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJD OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Jannaschia sp. ccs1]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cjd ConSurf].
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: dna-binding]]
+
__TOC__
-
[[Category: jcsg]]
+
</StructureSection>
-
[[Category: joint center for structural genomic]]
+
[[Category: Jannaschia sp. CCS1]]
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi-2]]
+
-
[[Category: putative tetr transcriptional regulator]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transcription regulation]]
+
-
[[Category: transcription regulator]]
+
-
[[Category: yp_510936 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 12:00:12 2008''
+

Current revision

Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution

PDB ID 3cjd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cjd"
Personal tools