3ck2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px {{Structure |PDB= 3ck2 |SIZE=350|CAPTION= <scene name='initialview01'>3ck2</scene>, resolution 2.300&Aring; |SITE= <scene name='pdbsite=AC1:Mn+Binding+Site+...)
Current revision (08:54, 30 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ck2.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of conserved uncharacterized protein (predicted phosphoesterase COG0622) from Streptococcus pneumoniae TIGR4==
-
|PDB= 3ck2 |SIZE=350|CAPTION= <scene name='initialview01'>3ck2</scene>, resolution 2.300&Aring;
+
<StructureSection load='3ck2' size='340' side='right'caption='[[3ck2]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Mn+Binding+Site+For+Residue+A+201'>AC1</scene>, <scene name='pdbsite=AC2:Mn+Binding+Site+For+Residue+A+202'>AC2</scene>, <scene name='pdbsite=AC3:Cl+Binding+Site+For+Residue+A+203'>AC3</scene>, <scene name='pdbsite=AC4:Cl+Binding+Site+For+Residue+A+204'>AC4</scene> and <scene name='pdbsite=AC5:Srt+Binding+Site+For+Residue+A+301'>AC5</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene>
+
<table><tr><td colspan='2'>[[3ck2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CK2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CK2 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
|GENE= SP_1879 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 Streptococcus pneumoniae TIGR4])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0622 COG0622]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ck2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ck2 OCA], [https://pdbe.org/3ck2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ck2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ck2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ck2 ProSAT], [https://www.topsan.org/Proteins/MCSG/3ck2 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ck2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ck2 OCA], [http://www.ebi.ac.uk/pdbsum/3ck2 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3ck2 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/A0A0H2URP5_STRPN A0A0H2URP5_STRPN]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of conserved uncharacterized protein (predicted phosphoesterase COG0622) from Streptococcus pneumoniae TIGR4'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/3ck2_consurf.spt"</scriptWhenChecked>
-
3CK2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CK2 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Streptococcus pneumoniae tigr4]]
+
</jmolCheckbox>
-
[[Category: Abdullah, J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ck2 ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Nocek, B.]]
+
</StructureSection>
-
[[Category: Zhou, M.]]
+
[[Category: Large Structures]]
-
[[Category: hydrolase]]
+
[[Category: Streptococcus pneumoniae TIGR4]]
-
[[Category: mcsg]]
+
[[Category: Abdullah J]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: predicted phosphodiesterase]]
+
[[Category: Nocek B]]
-
[[Category: protein structure initiative]]
+
[[Category: Zhou M]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 12:00:15 2008''
+

Current revision

Crystal structure of conserved uncharacterized protein (predicted phosphoesterase COG0622) from Streptococcus pneumoniae TIGR4

PDB ID 3ck2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools