This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6jfn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "6jfn" [edit=sysop:move=sysop])
Current revision (10:08, 22 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6jfn is ON HOLD
+
==K4U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa==
-
 
+
<StructureSection load='6jfn' size='340' side='right'caption='[[6jfn]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
-
Authors: Lee, I.H., Ho, T.H., Kang, L.W.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[6jfn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JFN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JFN FirstGlance]. <br>
-
Description: K4U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LHY:L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE'>LHY</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
[[Category: Lee, I.H]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jfn OCA], [https://pdbe.org/6jfn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jfn RCSB], [https://www.ebi.ac.uk/pdbsum/6jfn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jfn ProSAT]</span></td></tr>
-
[[Category: Ho, T.H]]
+
</table>
-
[[Category: Kang, L.W]]
+
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A071LDC0_PSEAI A0A071LDC0_PSEAI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas aeruginosa]]
 +
[[Category: Ho TH]]
 +
[[Category: Kang LW]]
 +
[[Category: Lee IH]]

Current revision

K4U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa

PDB ID 6jfn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools