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| - | [[Image:3cmb.jpg|left|200px]] | |
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| - | {{Structure
| + | ==Crystal structure of acetoacetate decarboxylase (YP_001047042.1) from Methanoculleus marisnigri JR1 at 1.60 A resolution== |
| - | |PDB= 3cmb |SIZE=350|CAPTION= <scene name='initialview01'>3cmb</scene>, resolution 1.600Å
| + | <StructureSection load='3cmb' size='340' side='right'caption='[[3cmb]], [[Resolution|resolution]] 1.60Å' scene=''> |
| - | |SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+C+265'>AC1</scene>, <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+B+265'>AC2</scene>, <scene name='pdbsite=AC3:Na+Binding+Site+For+Residue+B+266'>AC3</scene>, <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+A+265'>AC4</scene>, <scene name='pdbsite=AC5:Na+Binding+Site+For+Residue+B+267'>AC5</scene>, <scene name='pdbsite=AC6:Na+Binding+Site+For+Residue+B+268'>AC6</scene>, <scene name='pdbsite=AC7:Na+Binding+Site+For+Residue+A+266'>AC7</scene>, <scene name='pdbsite=AC8:Na+Binding+Site+For+Residue+D+265'>AC8</scene>, <scene name='pdbsite=AC9:Na+Binding+Site+For+Residue+D+266'>AC9</scene>, <scene name='pdbsite=BC1:Na+Binding+Site+For+Residue+C+266'>BC1</scene>, <scene name='pdbsite=BC2:Na+Binding+Site+For+Residue+A+267'>BC2</scene>, <scene name='pdbsite=BC3:Na+Binding+Site+For+Residue+B+269'>BC3</scene>, <scene name='pdbsite=BC4:Cl+Binding+Site+For+Residue+D+267'>BC4</scene>, <scene name='pdbsite=BC5:Cl+Binding+Site+For+Residue+D+268'>BC5</scene>, <scene name='pdbsite=BC6:Cl+Binding+Site+For+Residue+C+267'>BC6</scene>, <scene name='pdbsite=BC7:Cl+Binding+Site+For+Residue+A+268'>BC7</scene>, <scene name='pdbsite=BC8:P33+Binding+Site+For+Residue+A+269'>BC8</scene>, <scene name='pdbsite=BC9:P33+Binding+Site+For+Residue+B+270'>BC9</scene>, <scene name='pdbsite=CC1:Pe8+Binding+Site+For+Residue+C+268'>CC1</scene>, <scene name='pdbsite=CC2:Pe8+Binding+Site+For+Residue+D+269'>CC2</scene>, <scene name='pdbsite=CC3:Peg+Binding+Site+For+Residue+D+270'>CC3</scene>, <scene name='pdbsite=CC4:Peg+Binding+Site+For+Residue+B+271'>CC4</scene>, <scene name='pdbsite=CC5:Peg+Binding+Site+For+Residue+C+269'>CC5</scene>, <scene name='pdbsite=CC6:Peg+Binding+Site+For+Residue+A+271'>CC6</scene>, <scene name='pdbsite=CC7:Peg+Binding+Site+For+Residue+A+272'>CC7</scene>, <scene name='pdbsite=CC8:Peg+Binding+Site+For+Residue+B+272'>CC8</scene>, <scene name='pdbsite=CC9:Peg+Binding+Site+For+Residue+A+273'>CC9</scene> and <scene name='pdbsite=DC1:Peg+Binding+Site+For+Residue+A+274'>DC1</scene>
| + | == Structural highlights == |
| - | |LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>
| + | <table><tr><td colspan='2'>[[3cmb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanoculleus_marisnigri_JR1 Methanoculleus marisnigri JR1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CMB FirstGlance]. <br> |
| - | |ACTIVITY=
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
| - | |GENE= YP_001047042.1, Memar_1128 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=368407 Methanoculleus marisnigri JR1])
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> |
| - | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4689 Adc]</span>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cmb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmb OCA], [https://pdbe.org/3cmb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cmb RCSB], [https://www.ebi.ac.uk/pdbsum/3cmb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmb ProSAT], [https://www.topsan.org/Proteins/JCSG/3cmb TOPSAN]</span></td></tr> |
| - | |RELATEDENTRY=
| + | </table> |
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmb OCA], [http://www.ebi.ac.uk/pdbsum/3cmb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cmb RCSB]</span>
| + | == Function == |
| - | }}
| + | [https://www.uniprot.org/uniprot/A3CUL0_METMJ A3CUL0_METMJ] |
| - | | + | == Evolutionary Conservation == |
| - | '''Crystal structure of acetoacetate decarboxylase (YP_001047042.1) from Methanoculleus marisnigri JR1 at 1.60 A resolution'''
| + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | | + | Check<jmol> |
| - | | + | <jmolCheckbox> |
| - | ==About this Structure== | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmb_consurf.spt"</scriptWhenChecked> |
| - | 3CMB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanoculleus_marisnigri_jr1 Methanoculleus marisnigri jr1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMB OCA].
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| - | [[Category: Methanoculleus marisnigri jr1]]
| + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Single protein]]
| + | </jmolCheckbox> |
| - | [[Category: JCSG, Joint Center for Structural Genomics.]]
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cmb ConSurf]. |
| - | [[Category: acetoacetate decarboxylase]] | + | <div style="clear:both"></div> |
| - | [[Category: jcsg]] | + | __TOC__ |
| - | [[Category: joint center for structural genomic]]
| + | </StructureSection> |
| - | [[Category: lyase]]
| + | [[Category: Large Structures]] |
| - | [[Category: protein structure initiative]]
| + | [[Category: Methanoculleus marisnigri JR1]] |
| - | [[Category: psi-2]]
| + | |
| - | [[Category: structural genomic]]
| + | |
| - | [[Category: yp_001047042 1]]
| + | |
| - | | + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 12:00:27 2008''
| + | |
