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6ny3
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6ny3 is ON HOLD Authors: Liu, J.J., Orlova, N., Nogales, E., Doudna, J.A. Description: CasX ternary complex with 30bp target DNA [[Category: Unrele...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==CasX ternary complex with 30bp target DNA== | |
| + | <SX load='6ny3' size='340' side='right' viewer='molstar' caption='[[6ny3]], [[Resolution|resolution]] 3.70Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6ny3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Deltaproteobacteria_bacterium Deltaproteobacteria bacterium]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6e5o 6e5o]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NY3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NY3 FirstGlance]. <br> | ||
| + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DD725_10130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2026735 Deltaproteobacteria bacterium])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ny3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ny3 OCA], [http://pdbe.org/6ny3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ny3 RCSB], [http://www.ebi.ac.uk/pdbsum/6ny3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ny3 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The RNA-guided CRISPR-associated (Cas) proteins Cas9 and Cas12a provide adaptive immunity against invading nucleic acids, and function as powerful tools for genome editing in a wide range of organisms. Here we reveal the underlying mechanisms of a third, fundamentally distinct RNA-guided genome-editing platform named CRISPR-CasX, which uses unique structures for programmable double-stranded DNA binding and cleavage. Biochemical and in vivo data demonstrate that CasX is active for Escherichia coli and human genome modification. Eight cryo-electron microscopy structures of CasX in different states of assembly with its guide RNA and double-stranded DNA substrates reveal an extensive RNA scaffold and a domain required for DNA unwinding. These data demonstrate how CasX activity arose through convergent evolution to establish an enzyme family that is functionally separate from both Cas9 and Cas12a. | ||
| - | + | CasX enzymes comprise a distinct family of RNA-guided genome editors.,Liu JJ, Orlova N, Oakes BL, Ma E, Spinner HB, Baney KLM, Chuck J, Tan D, Knott GJ, Harrington LB, Al-Shayeb B, Wagner A, Brotzmann J, Staahl BT, Taylor KL, Desmarais J, Nogales E, Doudna JA Nature. 2019 Feb;566(7743):218-223. doi: 10.1038/s41586-019-0908-x. Epub 2019 Feb, 4. PMID:30718774<ref>PMID:30718774</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 6ny3" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </SX> | ||
| + | [[Category: Deltaproteobacteria bacterium]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Doudna, J A]] | ||
| + | [[Category: Liu, J J]] | ||
[[Category: Nogales, E]] | [[Category: Nogales, E]] | ||
| - | [[Category: Doudna, J.A]] | ||
| - | [[Category: Liu, J.J]] | ||
[[Category: Orlova, N]] | [[Category: Orlova, N]] | ||
| + | [[Category: Casx]] | ||
| + | [[Category: Crispr]] | ||
| + | [[Category: Rna binding protein-rna-dna complex]] | ||
| + | [[Category: Sgrna]] | ||
| + | [[Category: Target dna]] | ||
Current revision
CasX ternary complex with 30bp target DNA
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