This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wvp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:30, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Time-Resolved Crystal Structure of HindIII with 60sec soaking==
==Time-Resolved Crystal Structure of HindIII with 60sec soaking==
-
<StructureSection load='3wvp' size='340' side='right' caption='[[3wvp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='3wvp' size='340' side='right'caption='[[3wvp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wvp]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WVP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WVP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wvp]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WVP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3wvg|3wvg]], [[3wvh|3wvh]], [[3wvi|3wvi]], [[3wvk|3wvk]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hindIIIR, HI_1393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=71421 HAEIN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wvp OCA], [https://pdbe.org/3wvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wvp RCSB], [https://www.ebi.ac.uk/pdbsum/3wvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wvp ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wvp OCA], [http://pdbe.org/3wvp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wvp RCSB], [http://www.ebi.ac.uk/pdbsum/3wvp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wvp ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/T2D3_HAEIN T2D3_HAEIN]] Recognizes the double-stranded sequence AAGCTT and cleaves after A-1.
+
[https://www.uniprot.org/uniprot/T2D3_HAEIN T2D3_HAEIN] Recognizes the double-stranded sequence AAGCTT and cleaves after A-1.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 19:
</div>
</div>
<div class="pdbe-citations 3wvp" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3wvp" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Haein]]
+
[[Category: Haemophilus influenzae Rd KW20]]
-
[[Category: Type II site-specific deoxyribonuclease]]
+
[[Category: Large Structures]]
-
[[Category: Kawamura, T]]
+
[[Category: Synthetic construct]]
-
[[Category: Kobayashi, T]]
+
[[Category: Kawamura T]]
-
[[Category: Watanabe, N]]
+
[[Category: Kobayashi T]]
-
[[Category: Endonuclease]]
+
[[Category: Watanabe N]]
-
[[Category: Freeze-trap]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Hydrolase-dna complex]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Time-resolved]]
+
-
[[Category: Type ii restriction enzyme]]
+

Current revision

Time-Resolved Crystal Structure of HindIII with 60sec soaking

PDB ID 3wvp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3wvp"
Personal tools