This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wug

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:29, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==The mutant crystal structure of b-1,4-Xylanase (XynAS9_V43P/G44E) with xylobiose from Streptomyces sp. 9==
==The mutant crystal structure of b-1,4-Xylanase (XynAS9_V43P/G44E) with xylobiose from Streptomyces sp. 9==
-
<StructureSection load='3wug' size='340' side='right' caption='[[3wug]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
+
<StructureSection load='3wug' size='340' side='right'caption='[[3wug]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wug]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chainia_sp. Chainia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WUG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WUG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wug]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WUG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WUG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3wub|3wub]], [[3wue|3wue]], [[3wuf|3wuf]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PRD_900116:4beta-beta-xylobiose'>PRD_900116</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xynAS9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1931 Chainia sp.])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wug OCA], [https://pdbe.org/3wug PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wug RCSB], [https://www.ebi.ac.uk/pdbsum/3wug PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wug ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wug OCA], [http://pdbe.org/3wug PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wug RCSB], [http://www.ebi.ac.uk/pdbsum/3wug PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wug ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/XYNA_STRSQ XYNA_STRSQ]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chainia sp]]
+
[[Category: Large Structures]]
-
[[Category: Endo-1,4-beta-xylanase]]
+
[[Category: Streptomyces sp]]
-
[[Category: Chen, C C]]
+
[[Category: Chen CC]]
-
[[Category: Gao, J]]
+
[[Category: Gao J]]
-
[[Category: Guo, R T]]
+
[[Category: Guo RT]]
-
[[Category: Han, X]]
+
[[Category: Han X]]
-
[[Category: Huang, C H]]
+
[[Category: Huang CH]]
-
[[Category: Ko, T P]]
+
[[Category: Ko TP]]
-
[[Category: Lv, P]]
+
[[Category: Lv P]]
-
[[Category: Peng, W]]
+
[[Category: Peng W]]
-
[[Category: Yang, Y Y]]
+
[[Category: Yang YY]]
-
[[Category: Zheng, Y]]
+
[[Category: Zheng Y]]
-
[[Category: 4-xylanase]]
+
-
[[Category: Beta-1]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Protein engineering]]
+
-
[[Category: Protein rigidity]]
+
-
[[Category: Thermozyme]]
+

Current revision

The mutant crystal structure of b-1,4-Xylanase (XynAS9_V43P/G44E) with xylobiose from Streptomyces sp. 9

PDB ID 3wug

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools