This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6imk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:46, 22 November 2023) (edit) (undo)
 
Line 1: Line 1:
==The crystal structure of AsfvLIG:CG complex==
==The crystal structure of AsfvLIG:CG complex==
-
<StructureSection load='6imk' size='340' side='right' caption='[[6imk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='6imk' size='340' side='right'caption='[[6imk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6imk]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IMK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IMK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6imk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/African_swine_fever_virus African swine fever virus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IMK FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6imk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6imk OCA], [http://pdbe.org/6imk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6imk RCSB], [http://www.ebi.ac.uk/pdbsum/6imk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6imk ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.502&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6imk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6imk OCA], [https://pdbe.org/6imk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6imk RCSB], [https://www.ebi.ac.uk/pdbsum/6imk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6imk ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DNLI_ASFB7 DNLI_ASFB7] Very low-fidelity DNA ligase that seals nicks in double-stranded DNA during DNA repair (PubMed:15938630). Together with the viral repair DNA polymerase X, fills the single nucleotide gaps generated by the AP endonuclease (PubMed:15938630). It is not essential for viral replication and recombination (PubMed:15938630). Displays a very low adenylation activity towards DNA with 3'-dideoxy- or 3'-amino-terminated nicks compared to regular nick DNA (PubMed:15938630).<ref>PMID:15938630</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 18:
</div>
</div>
<div class="pdbe-citations 6imk" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6imk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[DNA ligase 3D structures|DNA ligase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chen, Y Q]]
+
[[Category: African swine fever virus]]
-
[[Category: Gan, J H]]
+
[[Category: Large Structures]]
-
[[Category: Asfvlig with c:g complex]]
+
[[Category: Synthetic construct]]
-
[[Category: Dna binding protein]]
+
[[Category: Chen YQ]]
-
[[Category: Ligase-dna complex]]
+
[[Category: Gan JH]]

Current revision

The crystal structure of AsfvLIG:CG complex

PDB ID 6imk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools