This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Adenylate kinase 3D structures
From Proteopedia
(Difference between revisions)
(New page: == 3D Structures of Adenylate kinase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *ADK unliganded **2ar7...) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == 3D Structures of Adenylate kinase == | + | == 3D Structures of [[Adenylate kinase]] == |
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| Line 6: | Line 6: | ||
*ADK unliganded | *ADK unliganded | ||
| - | **[[2ar7]] - hADK 4 | + | **[[7x7s]] - hADK 1 – human - NMR<br /> |
| + | **[[7de3]] - hADK 1 (mutant)<br /> | ||
| + | **[[2ar7]] - hADK 4 <br /> | ||
**[[3ndp]] - hADK 4 (mutant)<br /> | **[[3ndp]] - hADK 4 (mutant)<br /> | ||
**[[3iij]], [[3iik]] – hADK 6<br /> | **[[3iij]], [[3iik]] – hADK 6<br /> | ||
| Line 12: | Line 14: | ||
**[[3adk]] - ADK - pig<br /> | **[[3adk]] - ADK - pig<br /> | ||
**[[4ake]] - EcADK - ''Escherichia coli''<br /> | **[[4ake]] - EcADK - ''Escherichia coli''<br /> | ||
| - | **[[4x8h]] – EcADK (mutant)<br /> | + | **[[4x8h]], [[6rze]], [[6s36]] – EcADK (mutant)<br /> |
**[[3gmt]] - ADK - ''Burkholderia pseudodomallei''<br /> | **[[3gmt]] - ADK - ''Burkholderia pseudodomallei''<br /> | ||
**[[3cm0]] - ADK - ''Thermus thermophilus''<br /> | **[[3cm0]] - ADK - ''Thermus thermophilus''<br /> | ||
**[[2rh5]] - AaADK - ''Aquifex aeolicus''<br /> | **[[2rh5]] - AaADK - ''Aquifex aeolicus''<br /> | ||
**[[1p4s]] - MtADK - ''Mycobacterium tuberculosis''<br /> | **[[1p4s]] - MtADK - ''Mycobacterium tuberculosis''<br /> | ||
| - | **[[1ki9]] - | + | **[[1ki9]] - MthADK - ''Methanococcus thermolithotrophicus''<br /> |
**[[3be4]] - CpADK – ''Cryptosporidium parvum''<br /> | **[[3be4]] - CpADK – ''Cryptosporidium parvum''<br /> | ||
**[[3tlx]] – ADK 2 – ''Plasmodium falciparum''<br /> | **[[3tlx]] – ADK 2 – ''Plasmodium falciparum''<br /> | ||
| Line 24: | Line 26: | ||
**[[4ntz]], [[4w5h]] – SpADK – ''Streptococcus pneumoniae''<br /> | **[[4ntz]], [[4w5h]] – SpADK – ''Streptococcus pneumoniae''<br /> | ||
**[[4pzl]] – ADK – ''Francisella tularensis''<br /> | **[[4pzl]] – ADK – ''Francisella tularensis''<br /> | ||
| + | **[[5ycd]] – ADK – ''Poecilia reticulata''<br /> | ||
| + | **[[6pk5]] - MiADK – ''Methanotorris igneus''<br /> | ||
*ADK mononucleotide complex | *ADK mononucleotide complex | ||
| + | **[[6zjd]] - hADK 3 +ATP<br /> | ||
**[[2bwj]] - hADK 5+AMP<br /> | **[[2bwj]] - hADK 5+AMP<br /> | ||
**[[3iil]] – hADK 6 + MgADP-Pi<br /> | **[[3iil]] – hADK 6 + MgADP-Pi<br /> | ||
| Line 35: | Line 40: | ||
**[[2ak3]] - bADK+AMP<br /> | **[[2ak3]] - bADK+AMP<br /> | ||
**[[1dvr]] - yADK (mutant)+ATP analog - yeast<br /> | **[[1dvr]] - yADK (mutant)+ATP analog - yeast<br /> | ||
| - | **[[1ank]] - EcADK+AMP+AMPPNP<br /> | ||
| - | **[[2eck]], [[4jzk]] - EcADK+AMP+ADP<br /> | ||
**[[6f7u]] – EcADK + GCP<br /> | **[[6f7u]] – EcADK + GCP<br /> | ||
| - | **[[ | + | **[[7apu]] – EcADK + ADP<br /> |
**[[4cf7]], [[4jky]], [[4jl5]], [[4jl6]], [[4jl8]], [[4jla]], [[4jlb]], [[4jld]] – AaADK +ADP <br /> | **[[4cf7]], [[4jky]], [[4jl5]], [[4jl6]], [[4jl8]], [[4jla]], [[4jlb]], [[4jld]] – AaADK +ADP <br /> | ||
**[[4jlo]], [[4jlp]] – AaADK (mutant) +ADP <br /> | **[[4jlo]], [[4jlp]] – AaADK (mutant) +ADP <br /> | ||
| Line 44: | Line 47: | ||
**[[2cdn]] - MtADK+ADP<br /> | **[[2cdn]] - MtADK+ADP<br /> | ||
**[[1kht]] - ADK+AMP - ''Methanococcus voltae''<br /> | **[[1kht]] - ADK+AMP - ''Methanococcus voltae''<br /> | ||
| - | **[[ | + | **[[6pjw]] - MiADK+AMP <br /> |
| - | + | ||
*ADK complex with dinucletide polyphosphates | *ADK complex with dinucletide polyphosphates | ||
**[[1z83]] – hADK 1+Zn+AP5<br /> | **[[1z83]] – hADK 1+Zn+AP5<br /> | ||
| - | **[[2c9y]] - hADK 2+ A4P <br /> | ||
**[[2c95]] – hADK 1+ malonate + AP4<br /> | **[[2c95]] – hADK 1+ malonate + AP4<br /> | ||
| + | **[[2c9y]] - hADK 2+ A4P <br /> | ||
| + | **[[6zje]] – hADK 3 + AP5<br /> | ||
| + | **[[6zjb]] – hADK 3 + G5P<br /> | ||
**[[2bbw]] - hADK 4+GP5 <br /> | **[[2bbw]] - hADK 4+GP5 <br /> | ||
**[[5xz2]] – ADK +AP5 – zebrafish<br /> | **[[5xz2]] – ADK +AP5 – zebrafish<br /> | ||
| Line 59: | Line 63: | ||
**[[3aky]] - yADK (mutant)+AP5<br /> | **[[3aky]] - yADK (mutant)+AP5<br /> | ||
**[[3hpq]], [[3hpr]], [[1e4v]], [[1e4y]], [[4x8l]], [[4x8m]], [[4x8o]], [[5eje]] - EcADK (mutant)+AP5<br /> | **[[3hpq]], [[3hpr]], [[1e4v]], [[1e4y]], [[4x8l]], [[4x8m]], [[4x8o]], [[5eje]] - EcADK (mutant)+AP5<br /> | ||
| - | **[[1ake]] - EcADK+AP5<br /> | + | **[[1ake]], [[6ham]], [[6hap]] - EcADK+AP5<br /> |
**[[3x2s]] – EcADK 1+ Mg + pyrene acetamide + AP5<br /> | **[[3x2s]] – EcADK 1+ Mg + pyrene acetamide + AP5<br /> | ||
| + | **[[1ank]] - EcADK+AMP+AMPPNP<br /> | ||
| + | **[[2eck]], [[4jzk]] - EcADK+AMP+ADP<br /> | ||
**[[3h86]] - ADK+AP5 - ''Methanococcus maripaludis''<br /> | **[[3h86]] - ADK+AP5 - ''Methanococcus maripaludis''<br /> | ||
**[[3fb4]] - ADK+Zn+AP5 - ''Marinibacillus marinus''<br /> | **[[3fb4]] - ADK+Zn+AP5 - ''Marinibacillus marinus''<br /> | ||
| Line 66: | Line 72: | ||
**[[2qaj]], [[2oo7]], [[2p3s]], [[2ori]], [[2osb]], [[2eu8]], [[4mkf]], [[4mkg]], [[4mkh]], [[4qbf]], [[4qbg]], [[4qbh]], [[4qbi]], [[4typ]], [[4tyq]] - BsADK (mutant)+Zn+AP5<br /> | **[[2qaj]], [[2oo7]], [[2p3s]], [[2ori]], [[2osb]], [[2eu8]], [[4mkf]], [[4mkg]], [[4mkh]], [[4qbf]], [[4qbg]], [[4qbh]], [[4qbi]], [[4typ]], [[4tyq]] - BsADK (mutant)+Zn+AP5<br /> | ||
**[[2rgx]] - AaADK+Zn+AP5 <br /> | **[[2rgx]] - AaADK+Zn+AP5 <br /> | ||
| + | **[[3sr0]] - AaADK+AMP+ADP + AlF4<br /> | ||
**[[3be4]] - CpADK+AP5 <br /> | **[[3be4]] - CpADK+AP5 <br /> | ||
**[[1s3g]], [[5x6j]] - ADK+Zn+AP5 - ''Bacillus globisporus''<br /> | **[[1s3g]], [[5x6j]] - ADK+Zn+AP5 - ''Bacillus globisporus''<br /> | ||
| Line 72: | Line 79: | ||
**[[4nu0]], [[4w5j]] – SpADK +Mg +AP5<br /> | **[[4nu0]], [[4w5j]] – SpADK +Mg +AP5<br /> | ||
**[[5x6k]], [[5x6l]], [[5xru]], [[5ycb]], [[5ycc]] – ADK + AP5 – ''Notothenia coriiceps''<br /> | **[[5x6k]], [[5x6l]], [[5xru]], [[5ycb]], [[5ycc]] – ADK + AP5 – ''Notothenia coriiceps''<br /> | ||
| + | **[[6psp]] - MiADK+AP5<br /> | ||
| + | **[[1nks]] - ADK+AMP+ADP - ''Sulfolobus acidocaldarius''<br /> | ||
| + | **[[4k46]] - ADK+AMP+ADP – ''Photobacterium profundum''<br /> | ||
| + | **[[6ln3]] - ADK+AMP+ATP – ''Aeropyrum pernix''<br /> | ||
*ADK complexes with ions | *ADK complexes with ions | ||
| Line 78: | Line 89: | ||
**[[3l0s]] - DgADK+Co<br /> | **[[3l0s]] - DgADK+Co<br /> | ||
**[[2xb4]] - DgADK+Zn<br /> | **[[2xb4]] - DgADK+Zn<br /> | ||
| + | **[[6hf7]] - EcADK+ Tb<br /> | ||
}} | }} | ||
| + | [[Category: Topic Page]] | ||
Current revision
3D Structures of Adenylate kinase
Updated on 25-August-2022
