Adenylate kinase 3D structures
From Proteopedia
(Difference between revisions)
(New page: == 3D Structures of Adenylate kinase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *ADK unliganded **2ar7...) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == 3D Structures of Adenylate kinase == | + | == 3D Structures of [[Adenylate kinase]] == |
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| Line 6: | Line 6: | ||
*ADK unliganded | *ADK unliganded | ||
| - | **[[2ar7]] - hADK 4 | + | **[[7x7s]] - hADK 1 – human - NMR<br /> |
| + | **[[7de3]] - hADK 1 (mutant)<br /> | ||
| + | **[[2ar7]] - hADK 4 <br /> | ||
**[[3ndp]] - hADK 4 (mutant)<br /> | **[[3ndp]] - hADK 4 (mutant)<br /> | ||
**[[3iij]], [[3iik]] – hADK 6<br /> | **[[3iij]], [[3iik]] – hADK 6<br /> | ||
| Line 12: | Line 14: | ||
**[[3adk]] - ADK - pig<br /> | **[[3adk]] - ADK - pig<br /> | ||
**[[4ake]] - EcADK - ''Escherichia coli''<br /> | **[[4ake]] - EcADK - ''Escherichia coli''<br /> | ||
| - | **[[4x8h]] – EcADK (mutant)<br /> | + | **[[4x8h]], [[6rze]], [[6s36]] – EcADK (mutant)<br /> |
**[[3gmt]] - ADK - ''Burkholderia pseudodomallei''<br /> | **[[3gmt]] - ADK - ''Burkholderia pseudodomallei''<br /> | ||
**[[3cm0]] - ADK - ''Thermus thermophilus''<br /> | **[[3cm0]] - ADK - ''Thermus thermophilus''<br /> | ||
**[[2rh5]] - AaADK - ''Aquifex aeolicus''<br /> | **[[2rh5]] - AaADK - ''Aquifex aeolicus''<br /> | ||
**[[1p4s]] - MtADK - ''Mycobacterium tuberculosis''<br /> | **[[1p4s]] - MtADK - ''Mycobacterium tuberculosis''<br /> | ||
| - | **[[1ki9]] - | + | **[[1ki9]] - MthADK - ''Methanococcus thermolithotrophicus''<br /> |
**[[3be4]] - CpADK – ''Cryptosporidium parvum''<br /> | **[[3be4]] - CpADK – ''Cryptosporidium parvum''<br /> | ||
**[[3tlx]] – ADK 2 – ''Plasmodium falciparum''<br /> | **[[3tlx]] – ADK 2 – ''Plasmodium falciparum''<br /> | ||
| Line 24: | Line 26: | ||
**[[4ntz]], [[4w5h]] – SpADK – ''Streptococcus pneumoniae''<br /> | **[[4ntz]], [[4w5h]] – SpADK – ''Streptococcus pneumoniae''<br /> | ||
**[[4pzl]] – ADK – ''Francisella tularensis''<br /> | **[[4pzl]] – ADK – ''Francisella tularensis''<br /> | ||
| + | **[[5ycd]] – ADK – ''Poecilia reticulata''<br /> | ||
| + | **[[6pk5]] - MiADK – ''Methanotorris igneus''<br /> | ||
| + | **[[7owh]] – CoADK – ''Candidatus odinarchaeota''<br /> | ||
*ADK mononucleotide complex | *ADK mononucleotide complex | ||
| + | **[[6zjd]] - hADK 3 +ATP<br /> | ||
**[[2bwj]] - hADK 5+AMP<br /> | **[[2bwj]] - hADK 5+AMP<br /> | ||
**[[3iil]] – hADK 6 + MgADP-Pi<br /> | **[[3iil]] – hADK 6 + MgADP-Pi<br /> | ||
| Line 35: | Line 41: | ||
**[[2ak3]] - bADK+AMP<br /> | **[[2ak3]] - bADK+AMP<br /> | ||
**[[1dvr]] - yADK (mutant)+ATP analog - yeast<br /> | **[[1dvr]] - yADK (mutant)+ATP analog - yeast<br /> | ||
| - | **[[1ank]] - EcADK+AMP+AMPPNP<br /> | ||
| - | **[[2eck]], [[4jzk]] - EcADK+AMP+ADP<br /> | ||
**[[6f7u]] – EcADK + GCP<br /> | **[[6f7u]] – EcADK + GCP<br /> | ||
| - | **[[ | + | **[[7apu]], [[8crg]], [[8rj4]] – EcADK + ADP<br /> |
| + | **[[8rj9]] – EcADK (mutant) + ADP<br /> | ||
**[[4cf7]], [[4jky]], [[4jl5]], [[4jl6]], [[4jl8]], [[4jla]], [[4jlb]], [[4jld]] – AaADK +ADP <br /> | **[[4cf7]], [[4jky]], [[4jl5]], [[4jl6]], [[4jl8]], [[4jla]], [[4jlb]], [[4jld]] – AaADK +ADP <br /> | ||
**[[4jlo]], [[4jlp]] – AaADK (mutant) +ADP <br /> | **[[4jlo]], [[4jlp]] – AaADK (mutant) +ADP <br /> | ||
| Line 44: | Line 49: | ||
**[[2cdn]] - MtADK+ADP<br /> | **[[2cdn]] - MtADK+ADP<br /> | ||
**[[1kht]] - ADK+AMP - ''Methanococcus voltae''<br /> | **[[1kht]] - ADK+AMP - ''Methanococcus voltae''<br /> | ||
| - | **[[ | + | **[[6pjw]] - MiADK+AMP <br /> |
| - | **[[ | + | **[[7owj]] – CoADK + GTP <br /> |
| + | **[[7owk]] – CoADK + TTP<br /> | ||
| + | **[[7owl]] – CoADK + CTP<br /> | ||
*ADK complex with dinucletide polyphosphates | *ADK complex with dinucletide polyphosphates | ||
**[[1z83]] – hADK 1+Zn+AP5<br /> | **[[1z83]] – hADK 1+Zn+AP5<br /> | ||
| - | **[[2c9y]] - hADK 2+ A4P <br /> | ||
**[[2c95]] – hADK 1+ malonate + AP4<br /> | **[[2c95]] – hADK 1+ malonate + AP4<br /> | ||
| + | **[[2c9y]] - hADK 2+ A4P <br /> | ||
| + | **[[6zje]] – hADK 3 + AP5<br /> | ||
| + | **[[6zjb]] – hADK 3 + G5P<br /> | ||
**[[2bbw]] - hADK 4+GP5 <br /> | **[[2bbw]] - hADK 4+GP5 <br /> | ||
**[[5xz2]] – ADK +AP5 – zebrafish<br /> | **[[5xz2]] – ADK +AP5 – zebrafish<br /> | ||
| Line 58: | Line 67: | ||
**[[1aky]], [[2aky]] - yADK+AP5<br /> | **[[1aky]], [[2aky]] - yADK+AP5<br /> | ||
**[[3aky]] - yADK (mutant)+AP5<br /> | **[[3aky]] - yADK (mutant)+AP5<br /> | ||
| - | **[[3hpq]], [[3hpr]], [[1e4v]], [[1e4y]], [[4x8l]], [[4x8m]], [[4x8o]], [[5eje]] - EcADK (mutant)+AP5<br /> | + | **[[3hpq]], [[3hpr]], [[1e4v]], [[1e4y]], [[4x8l]], [[4x8m]], [[4x8o]], [[5eje]], [[8bqf]], [[8q2b]] - EcADK (mutant)+AP5<br /> |
| - | **[[1ake]] - EcADK+AP5<br /> | + | **[[1ake]], [[6ham]], [[6hap]] - EcADK+AP5<br /> |
**[[3x2s]] – EcADK 1+ Mg + pyrene acetamide + AP5<br /> | **[[3x2s]] – EcADK 1+ Mg + pyrene acetamide + AP5<br /> | ||
| + | **[[1ank]] - EcADK+AMP+AMPPNP<br /> | ||
| + | **[[2eck]], [[4jzk]] - EcADK+AMP+ADP<br /> | ||
| + | **[[8rj6]] – EcADK + AMP + ATP<br /> | ||
**[[3h86]] - ADK+AP5 - ''Methanococcus maripaludis''<br /> | **[[3h86]] - ADK+AP5 - ''Methanococcus maripaludis''<br /> | ||
**[[3fb4]] - ADK+Zn+AP5 - ''Marinibacillus marinus''<br /> | **[[3fb4]] - ADK+Zn+AP5 - ''Marinibacillus marinus''<br /> | ||
| Line 66: | Line 78: | ||
**[[2qaj]], [[2oo7]], [[2p3s]], [[2ori]], [[2osb]], [[2eu8]], [[4mkf]], [[4mkg]], [[4mkh]], [[4qbf]], [[4qbg]], [[4qbh]], [[4qbi]], [[4typ]], [[4tyq]] - BsADK (mutant)+Zn+AP5<br /> | **[[2qaj]], [[2oo7]], [[2p3s]], [[2ori]], [[2osb]], [[2eu8]], [[4mkf]], [[4mkg]], [[4mkh]], [[4qbf]], [[4qbg]], [[4qbh]], [[4qbi]], [[4typ]], [[4tyq]] - BsADK (mutant)+Zn+AP5<br /> | ||
**[[2rgx]] - AaADK+Zn+AP5 <br /> | **[[2rgx]] - AaADK+Zn+AP5 <br /> | ||
| + | **[[3sr0]] - AaADK+AMP+ADP + AlF4<br /> | ||
**[[3be4]] - CpADK+AP5 <br /> | **[[3be4]] - CpADK+AP5 <br /> | ||
**[[1s3g]], [[5x6j]] - ADK+Zn+AP5 - ''Bacillus globisporus''<br /> | **[[1s3g]], [[5x6j]] - ADK+Zn+AP5 - ''Bacillus globisporus''<br /> | ||
| Line 72: | Line 85: | ||
**[[4nu0]], [[4w5j]] – SpADK +Mg +AP5<br /> | **[[4nu0]], [[4w5j]] – SpADK +Mg +AP5<br /> | ||
**[[5x6k]], [[5x6l]], [[5xru]], [[5ycb]], [[5ycc]] – ADK + AP5 – ''Notothenia coriiceps''<br /> | **[[5x6k]], [[5x6l]], [[5xru]], [[5ycb]], [[5ycc]] – ADK + AP5 – ''Notothenia coriiceps''<br /> | ||
| + | **[[6psp]] - MiADK+AP5<br /> | ||
| + | **[[1nks]] - ADK+AMP+ADP - ''Sulfolobus acidocaldarius''<br /> | ||
| + | **[[4k46]] - ADK+AMP+ADP – ''Photobacterium profundum''<br /> | ||
| + | **[[6ln3]] - ADK+AMP+ATP – ''Aeropyrum pernix''<br /> | ||
| + | **[[7owe]] – CoADK + AP5<br /> | ||
*ADK complexes with ions | *ADK complexes with ions | ||
| Line 78: | Line 96: | ||
**[[3l0s]] - DgADK+Co<br /> | **[[3l0s]] - DgADK+Co<br /> | ||
**[[2xb4]] - DgADK+Zn<br /> | **[[2xb4]] - DgADK+Zn<br /> | ||
| + | **[[6hf7]] - EcADK+ Tb<br /> | ||
}} | }} | ||
| + | [[Category: Topic Page]] | ||
Current revision
3D Structures of Adenylate kinase
Updated on 11-September-2024
