This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6aa7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:09, 15 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Fluorescent protein from Acropora digitifera==
==Fluorescent protein from Acropora digitifera==
-
<StructureSection load='6aa7' size='340' side='right' caption='[[6aa7]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='6aa7' size='340' side='right'caption='[[6aa7]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6aa7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acrdi Acrdi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AA7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AA7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6aa7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acropora_digitifera Acropora digitifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6AA7 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYG:[(4Z)-2-[(1Z)-ETHANIMIDOYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>XYG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">M, LWE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70779 ACRDI])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XYG:[(4Z)-2-[(1Z)-ETHANIMIDOYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>XYG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6aa7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aa7 OCA], [http://pdbe.org/6aa7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aa7 RCSB], [http://www.ebi.ac.uk/pdbsum/6aa7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aa7 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6aa7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aa7 OCA], [https://pdbe.org/6aa7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6aa7 RCSB], [https://www.ebi.ac.uk/pdbsum/6aa7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6aa7 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A1S7IWI8_ACRDI A0A1S7IWI8_ACRDI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Acrdi]]
 
-
[[Category: Hwang, K Y]]
 
-
[[Category: Kim, S E]]
 
-
[[Category: Nam, K H]]
 
[[Category: Acropora digitifera]]
[[Category: Acropora digitifera]]
-
[[Category: Chromophore]]
+
[[Category: Large Structures]]
-
[[Category: Fluorescent protein]]
+
[[Category: Hwang KY]]
-
[[Category: Red fluorescent protein]]
+
[[Category: Kim SE]]
 +
[[Category: Nam KH]]

Current revision

Fluorescent protein from Acropora digitifera

PDB ID 6aa7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools