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| <StructureSection load='4aqq' size='340' side='right'caption='[[4aqq]], [[Resolution|resolution]] 4.75Å' scene=''> | | <StructureSection load='4aqq' size='340' side='right'caption='[[4aqq]], [[Resolution|resolution]] 4.75Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4aqq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ade03 Ade03]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AQQ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4aqq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_adenovirus_B3 Human adenovirus B3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AQQ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.75Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ar2|4ar2]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4aqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4aqq OCA], [http://pdbe.org/4aqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4aqq RCSB], [http://www.ebi.ac.uk/pdbsum/4aqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4aqq ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4aqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4aqq OCA], [https://pdbe.org/4aqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4aqq RCSB], [https://www.ebi.ac.uk/pdbsum/4aqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4aqq ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q2Y0H9_ADE03 Q2Y0H9_ADE03] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 4aqq" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4aqq" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Ade03]] | + | [[Category: Human adenovirus B3]] |
- | [[Category: Andreev, I]] | + | [[Category: Large Structures]] |
- | [[Category: Andrieu, J P]] | + | [[Category: Andreev I]] |
- | [[Category: Burmeister, W P]] | + | [[Category: Andrieu J-P]] |
- | [[Category: Chroboczek, J]] | + | [[Category: Burmeister WP]] |
- | [[Category: Cusack, S]] | + | [[Category: Chroboczek J]] |
- | [[Category: Fender, P]] | + | [[Category: Cusack S]] |
- | [[Category: Naskalska, A]] | + | [[Category: Fender P]] |
- | [[Category: Nerlo, B]] | + | [[Category: Naskalska A]] |
- | [[Category: Schoehn, G]] | + | [[Category: Nerlo B]] |
- | [[Category: Szolajska, E]] | + | [[Category: Schoehn G]] |
- | [[Category: Zochowska, M]] | + | [[Category: Szolajska E]] |
- | [[Category: Zubieta, C]] | + | [[Category: Zochowska M]] |
- | [[Category: Capsid protein]]
| + | [[Category: Zubieta C]] |
- | [[Category: Dsdna virus]]
| + | |
- | [[Category: Strand swapping]]
| + | |
- | [[Category: Viral protein]]
| + | |
- | [[Category: Virus-like particle]]
| + | |
| Structural highlights
Function
Q2Y0H9_ADE03
Publication Abstract from PubMed
During the viral life cycle adenoviruses produce excess capsid proteins. Human adenovirus serotype 3 (Ad3) synthesizes predominantly an excess of free pentons, the complexes of pentameric penton base and trimeric fiber proteins, which are responsible for virus penetration. In infected cells Ad3 pentons spontaneously assemble into dodecahedral virus-like nano-particles containing twelve pentons. They also form in insect cells during expression in the baculovirus system. Similarly, in the absence of fiber protein dodecahedric particles built of 12 penton base pentamers can be produced. Both kinds of dodecahedra show remarkable efficiency of intracellular penetration and can be engineered to deliver several millions of foreign cargo molecules to a single target cell. For this reason, they are of great interest as a delivery vector. In order to successfully manipulate this potential vector for drug and/or gene delivery, an understanding of the molecular basis of vector assembly and integrity is critical. Crystallographic data in conjunction with site-directed mutagenesis and biochemical analysis provide a model for the molecular determinants of dodecamer particle assembly and the requirements for stability. The 3.8 A crystal structure of Ad3 penton base dodecamer (Dd) shows that the dodecahedric structure is stabilized by strand-swapping between neighboring penton base molecules. Such N-terminal strand-swapping does not occur for Dd of Ad2, a serotype which does not form Dd under physiological conditions. This unique stabilization of the Ad3 dodecamer is controlled by residues 59-61 located at the site of strand switching, the residues involved in putative salt bridges between pentamers and by the disordered N-terminus (residues 1-47), as confirmed by site directed mutagenesis and biochemical analysis of mutant and wild type protein. We also provide evidence that the distal N-terminal residues are externally exposed and available for attaching cargo.
The structural basis for the integrity of adenovirus ad3 dodecahedron.,Szolajska E, Burmeister WP, Zochowska M, Nerlo B, Andreev I, Schoehn G, Andrieu JP, Fender P, Naskalska A, Zubieta C, Cusack S, Chroboczek J PLoS One. 2012;7(9):e46075. doi: 10.1371/journal.pone.0046075. Epub 2012 Sep 25. PMID:23049939[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Szolajska E, Burmeister WP, Zochowska M, Nerlo B, Andreev I, Schoehn G, Andrieu JP, Fender P, Naskalska A, Zubieta C, Cusack S, Chroboczek J. The structural basis for the integrity of adenovirus ad3 dodecahedron. PLoS One. 2012;7(9):e46075. doi: 10.1371/journal.pone.0046075. Epub 2012 Sep 25. PMID:23049939 doi:http://dx.doi.org/10.1371/journal.pone.0046075
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