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| | <StructureSection load='4aqu' size='340' side='right'caption='[[4aqu]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='4aqu' size='340' side='right'caption='[[4aqu]], [[Resolution|resolution]] 2.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4aqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AQU FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4aqu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AQU FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1af5|1af5]], [[1bp7|1bp7]], [[1g9y|1g9y]], [[1g9z|1g9z]], [[1mow|1mow]], [[1n3e|1n3e]], [[1n3f|1n3f]], [[1t9i|1t9i]], [[1t9j|1t9j]], [[1u0c|1u0c]], [[1u0d|1u0d]], [[2vbj|2vbj]], [[2vbl|2vbl]], [[2vbn|2vbn]], [[2vbo|2vbo]], [[4aab|4aab]], [[4aad|4aad]], [[4aae|4aae]], [[4aaf|4aaf]], [[4aag|4aag]]</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4aqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4aqu OCA], [https://pdbe.org/4aqu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4aqu RCSB], [https://www.ebi.ac.uk/pdbsum/4aqu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4aqu ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4aqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4aqu OCA], [http://pdbe.org/4aqu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4aqu RCSB], [http://www.ebi.ac.uk/pdbsum/4aqu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4aqu ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/DNE1_CHLRE DNE1_CHLRE]] Endonuclease involved in group I intron homing. Recognizes and cleaves a 19-24 bp palindromic DNA site. | + | [https://www.uniprot.org/uniprot/DNE1_CHLRE DNE1_CHLRE] Endonuclease involved in group I intron homing. Recognizes and cleaves a 19-24 bp palindromic DNA site. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | | |
| | ==See Also== | | ==See Also== |
| - | *[[Endonuclease|Endonuclease]] | + | *[[Endonuclease 3D structures|Endonuclease 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Chlre]] | + | [[Category: Chlamydomonas reinhardtii]] |
| - | [[Category: Daboussi, F]] | + | [[Category: Large Structures]] |
| - | [[Category: Duchateau, P]] | + | [[Category: Synthetic construct]] |
| - | [[Category: Leduc, S]] | + | [[Category: Daboussi F]] |
| - | [[Category: Macmaster, R]] | + | [[Category: Duchateau P]] |
| - | [[Category: Molina, R]] | + | [[Category: Leduc S]] |
| - | [[Category: Montoya, G]] | + | [[Category: Macmaster R]] |
| - | [[Category: Redondo, P]] | + | [[Category: Molina R]] |
| - | [[Category: Valton, J]] | + | [[Category: Montoya G]] |
| - | [[Category: Gene targeting]]
| + | [[Category: Redondo P]] |
| - | [[Category: Homing endonuclease]]
| + | [[Category: Valton J]] |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Protein-dna interaction]]
| + | |
| Structural highlights
Function
DNE1_CHLRE Endonuclease involved in group I intron homing. Recognizes and cleaves a 19-24 bp palindromic DNA site.
Publication Abstract from PubMed
In this study, we asked whether CpG methylation could influence the DNA binding affinity and activity of meganucleases used for genome engineering applications. A combination of biochemical and structural approaches enabled us to demonstrate that CpG methylation decreases I-CreI DNA binding affinity and inhibits its endonuclease activity in vitro. This inhibition depends on the position of the methylated cytosine within the DNA target and was almost total when it is located inside the central tetrabase. Crystal structures of I-CreI bound to methylated cognate target DNA suggested a molecular basis for such inhibition, although the precise mechanism still has to be specified. Finally, we demonstrated that the efficacy of engineered meganucleases can be diminished by CpG methylation of the targeted endogenous site, and we proposed a rational design of the meganuclease DNA binding domain to alleviate such an effect. We conclude that although activity and sequence specificity of engineered meganucleases are crucial parameters, target DNA epigenetic modifications need to be considered for successful gene editions.
5'-Cytosine-phosphoguanine (CpG) methylation impacts the activity of natural and engineered meganucleases.,Valton J, Daboussi F, Leduc S, Molina R, Redondo P, Macmaster R, Montoya G, Duchateau P J Biol Chem. 2012 Aug 31;287(36):30139-50. Epub 2012 Jun 27. PMID:22740697[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Valton J, Daboussi F, Leduc S, Molina R, Redondo P, Macmaster R, Montoya G, Duchateau P. 5'-Cytosine-phosphoguanine (CpG) methylation impacts the activity of natural and engineered meganucleases. J Biol Chem. 2012 Aug 31;287(36):30139-50. Epub 2012 Jun 27. PMID:22740697 doi:http://dx.doi.org/10.1074/jbc.M112.379966
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