Amylase 3D structures

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(New page: ==3D structures of amylase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * α-amylase ** 3n8t – TkAAM – ...)
Current revision (07:28, 29 September 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
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-
==3D structures of amylase==
+
==3D structures of [[Amylase]]==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
* α-amylase
* α-amylase
-
** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''
+
** [[1pif]] – pAAM – pig<br />
-
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''
+
**[[8or6]] – AAM – ''Drosophila melanogaster''<br />
-
** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''
+
** [[1ht6]], [[1amy]] - bAAM – barley<br />
-
** [[2wpg]] – AAM – ''Xanthomonas campestris''
+
** [[3bsg]] – bAAM (mutant) <br />
-
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''
+
** [[3wn6]] – AAM (mutant) – Japonica rice<br />
-
** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''
+
** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br />
-
** [[1e3x]], [[1e43]] – BaAAM chimera
+
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br />
-
** [[1ht6]], [[1amy]] - bAAM – barley
+
** [[3kwx]], [[2guy]], [[6xsj]], [[6xsv]], [[7p4w]] – AoAAM – ''Aspergilluys oryzae''<br />
-
** [[3bsg]] – bAAM (mutant)
+
** [[2wpg]] – AAM – ''Xanthomonas campestris''<br />
-
** [[3dhu]] – AAM – ''Lactobacillus plantarum''
+
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br />
-
** [[3dc0]], [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]], [[1ud3]] – BacAAM – ''Bacillus KR8104''
+
** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''<br />
-
** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''
+
** [[1e3x]], [[1e43]] – BaAAM chimera<br />
-
** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''
+
** [[3dhu]] – AAM – ''Lactobacillus plantarum''<br />
-
** [[2gjr]] – BhAAM – ''Bacillus halmapalus''
+
** [[3dc0]], [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]], [[1ud3]] – BacAAM – ''Bacillus KR8104''<br />
-
** [[2b5d]] – AAM – ''Thermotoga maritima''
+
** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''<br />
-
** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''
+
** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''<br />
-
** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''
+
**[[8jn0]] - AAM alkaline 34-122 – ''Alkalihalophilum pseudofirmus''
 +
** [[2gjr]] – BhAAM – ''Bacillus halmapalus''<br />
 +
** [[2b5d]] – AAM – ''Thermotoga maritima''<br />
 +
** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''<br />
 +
** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''<br />
** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
-
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''
+
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br />
-
** [[1ob0]], [[1bli]] - BlAAM (mutant) – ''Bacillus licheniformis''<br />
+
**[[6toy]] - BlAAM – ''Bacillus licheniformis''<br />
 +
** [[1ob0]], [[1bli]], [[6tp2]] - BlAAM (mutant) <br />
** [[1vjs]] – BlAAM precursor<br />
** [[1vjs]] – BlAAM precursor<br />
** [[1bpl]] – BlAAM<br />
** [[1bpl]] – BlAAM<br />
-
** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''
+
** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''<br />
-
** [[1jd7]], [[1jd9]] - PhAAM (mutant)
+
** [[1jd7]], [[1jd9]], [[8cqg]] - PhAAM (mutant)<br />
-
** [[1g5a]] – NpAAM – ''Neisseria polysaccharea''
+
** [[1g5a]] – NpAAM – ''Neisseria polysaccharea''<br />
-
** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus''
+
** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus''<br />
**[[4uzu]] – BaAAM (mutant) <br />
**[[4uzu]] – BaAAM (mutant) <br />
-
** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus''
+
** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus''<br />
-
** [[1jae]] – TmAAM – ''Tenebrio molitor''
+
** [[1jae]] – TmAAM – ''Tenebrio molitor''<br />
-
** [[1pif]] – pAAM – pig
+
** [[6taa]], [[2aaa]] - AoAAM<br />
** [[6taa]], [[2aaa]] - AoAAM<br />
** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br />
** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br />
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**[[5m99]] – AAM – ''Thermotoga petrophila''<br />
**[[5m99]] – AAM – ''Thermotoga petrophila''<br />
** [[4ays]] – AAM – ''Deinococcus radiodurans''<br />
** [[4ays]] – AAM – ''Deinococcus radiodurans''<br />
-
** [[3wn6]] – AAM (mutant) – Japonica rice<br />
 
**[[5a2a]] - AnAAM - ''Anoxybacillus''<br />
**[[5a2a]] - AnAAM - ''Anoxybacillus''<br />
**[[6az5]] – AAM – ''Eubacterium rectale''<br />
**[[6az5]] – AAM – ''Eubacterium rectale''<br />
 +
**[[6sao]] – AAM – ''Thamnidium elegans''<br />
 +
**[[6sau]] – AAM – ''Cordyceps farinosa''<br />
 +
**[[6sav]] – AAM – ''Rhizomucor pusillus''<br />
 +
**[[6m4k]] – EfAAM – ''Eisenia fetida''<br />
 +
**[[6m4l]], [[6m4m]] – EfAAM (mutant) <br />
 +
**[[7jjt]] - AAM – ''Ruminococcus bromii''<br />
 +
**[[8xx9]] – RmAAM 232—886 – ''Rhodothermus marinus''<br />
 +
**[[8im8]] – AAM – ''Escherichia coli''<br />
 +
**[[8dge]] – BoAAM – ''Bacterioides ovatus''<br />
** ''AAM saccharide complexes''
** ''AAM saccharide complexes''
-
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
 
*** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br />
*** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br />
*** [[1hx0]] – pAAM + acarbose<br />
*** [[1hx0]] – pAAM + acarbose<br />
*** [[1ose]] – pAAM + acarbose<br />
*** [[1ose]] – pAAM + acarbose<br />
 +
*** [[1bg9]], [[1rpk]] - bAAM + acarbose<br />
 +
*** [[1p6w]] – bAAM + substrate analog
 +
*** [[1rp8]], [[1b1y]], [[1rp9]] - bAAM (mutant) + saccharide<br />
 +
*** [[3bsh]], [[2qpu]], [[2qps]] - bAAM (mutant) + acarbose<br />
 +
**[[6f9h]], [[6f9j]] - bAAM (mutant) + prodrug<br />
 +
**[[6f9l]] - bAAM (mutant) + maltose derivative<br />
*** [[3k8l]] - BtAAM (mutant) + saccharide<br />
*** [[3k8l]] - BtAAM (mutant) + saccharide<br />
*** [[3k8m]] - BtAAM + acarbose<br />
*** [[3k8m]] - BtAAM + acarbose<br />
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*** [[3a6o]] – TvAAM + acarbose<br />
*** [[3a6o]] – TvAAM + acarbose<br />
*** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br />
*** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br />
-
*** [[1uh3]] - TvAAM (mutant) + acarbose<br />
 
-
*** [[1bg9]], [[1rpk]] - bAAM + acarbose<br />
 
-
*** [[1p6w]] – bAAM + substrate analog
 
-
*** [[1rp8]], [[1b1y]], [[1rp9]] - bAAM (mutant) + saccharide<br />
 
-
*** [[3bsh]], [[2qpu]], [[2qps]] - bAAM (mutant) + acarbose<br />
 
-
**[[6f9h]], [[6f9j]] - bAAM (mutant) + prodrug<br />
 
-
**[[6f9l]] - bAAM (mutant) + maltose derivative<br />
 
*** [[3bcd]] - HoAAM + saccharide<br />
*** [[3bcd]] - HoAAM + saccharide<br />
*** [[3bc9]] - HoAAM + acarbose<br />
*** [[3bc9]] - HoAAM + acarbose<br />
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*** [[3qgv]] - PwAAM + sucrose<br />
*** [[3qgv]] - PwAAM + sucrose<br />
*** [[1g9h]], [[1g94]] - PhAAM + saccharide<br />
*** [[1g9h]], [[1g94]] - PhAAM + saccharide<br />
-
*** [[1kxh]] - PhAAM (mutant) + acarbose<br />
+
*** [[1kxh]], [[8ckf]] - PhAAM (mutant) + acarbose<br />
*** [[1e40]] – BaAAM chimera + saccharide<br />
*** [[1e40]] – BaAAM chimera + saccharide<br />
*** [[1e3z]] - BaAAM chimera + acarbose<br />
*** [[1e3z]] - BaAAM chimera + acarbose<br />
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*** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br />
*** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br />
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br />
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br />
-
**[[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br />
+
*** [[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br />
 +
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
 +
*** [[6toz]], [[6tp0]], [[6tp1]] - BlAAM + saccharide<br />
 +
**[[8xxa]] - RmAAM + saccharide <br />
 +
**[[8dl1]], [[8dl2]] - BoAAM + saccharide <br />
** ''AAM other complexes''
** ''AAM other complexes''
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*Human pancreatic α-amylase
*Human pancreatic α-amylase
-
**[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]] – hAAM – human<br />
+
**[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]], [[6z8l]] – hAAM – human<br />
**[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br />
**[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br />
**[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br />
**[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br />
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**[[1xh1]] - hAAM (mutant) + Cl<br />
**[[1xh1]] - hAAM (mutant) + Cl<br />
**[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin<br />
**[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin<br />
-
**[[1u2y]], [[1u30]], [[1u33]], [[5emy]], [[5e0f]], [[4w93]] – hAAM + inhibitor <br />
+
**[[1u2y]], [[1u30]], [[1u33]], [[5emy]], [[5e0f]], [[4w93]], [[6obx]], [[6ocn]] – hAAM + inhibitor <br />
**[[5kez]], [[5va9]] – hAAM + peptide inhibitor <br />
**[[5kez]], [[5va9]] – hAAM + peptide inhibitor <br />
**[[4gqq]] – hAAM + ethyl caffeate<br />
**[[4gqq]] – hAAM + ethyl caffeate<br />
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**[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]] - hAAM (mutant) + saccharide<br />
**[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]] - hAAM (mutant) + saccharide<br />
**[[3dhp]] - hAAM (mutant) + acarbose<br />
**[[3dhp]] - hAAM (mutant) + acarbose<br />
- 
* Pullulanase α-amylase
* Pullulanase α-amylase
 +
** [[2wan]] – AAM – ''Bacillus acidopullululyticus''
** [[2wan]] – AAM – ''Bacillus acidopullululyticus''
** [[2fgz]] – KaAAM – ''Klebsiella aerogenes''
** [[2fgz]] – KaAAM – ''Klebsiella aerogenes''
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** ''Pullulanase α-amylase binary complexes''
** ''Pullulanase α-amylase binary complexes''
 +
*** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br />
*** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br />
*** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae''
*** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae''
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* Neopullulanase α-amylase
* Neopullulanase α-amylase
 +
** [[4aef]] – AAM – ''Pyrococcus furiosus''<br />
** [[4aef]] – AAM – ''Pyrococcus furiosus''<br />
** [[1j0h]] – BsAAM<br />
** [[1j0h]] – BsAAM<br />
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* β-amylase
* β-amylase
-
** [[2xfr]] – bBAM
+
 
-
** [[1wdp]] – sBAM – soybean
+
** [[2xfr]] – bBAM<br />
-
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)
+
** [[1wdp]] – sBAM – soybean<br />
-
** [[1vem]], [[5bca]], [[1cqy]], [[1b90]] – BcBAM – ''Bacillus cereus''
+
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)<br />
-
** [[1ven]] - BcBAM (mutant)<br />
+
** [[1fa2]] - BAM + saccharide – Sweet potato<br />
** [[1fa2]] - BAM + saccharide – Sweet potato<br />
**[[6ger]] - BAM – wheat<br />
**[[6ger]] - BAM – wheat<br />
 +
** [[1vem]], [[5bca]], [[1cqy]], [[1b90]] – BcBAM – ''Bacillus cereus''
 +
** [[1ven]] - BcBAM (mutant)<br />
** ''β-amylase binary complexes''
** ''β-amylase binary complexes''
 +
*** [[2xff]] – bBAM + acarbose<br />
*** [[2xff]] – bBAM + acarbose<br />
*** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br />
*** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br />
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*** [[1wdq]], [[1wdr]], [[1wds]], [[1v3h]], [[1v3i]], [[1q6d]], [[1q6e]], [[1q6f]], [[1q6g]] - sBAM (mutant) + saccharide<br />
*** [[1wdq]], [[1wdr]], [[1wds]], [[1v3h]], [[1v3i]], [[1q6d]], [[1q6e]], [[1q6f]], [[1q6g]] - sBAM (mutant) + saccharide<br />
*** [[1q6c]], [[1bfn]], [[1bya]], [[1byb]], [[1byc]], [[1byd]], [[1btc]] - sBAM + saccharide<br />
*** [[1q6c]], [[1bfn]], [[1bya]], [[1byb]], [[1byc]], [[1byd]], [[1btc]] - sBAM + saccharide<br />
-
*** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]] - BcBAM + saccharide<br />
+
*** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]], [[8zrz]] - BcBAM + saccharide<br />
*** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br />
*** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br />
-
**[[1fa2]], [[5wqu]] - SpBAM + saccharide <br />
+
*** [[1fa2]], [[5wqu]] - SpBAM + saccharide <br />
* γ-amylase
* γ-amylase
 +
** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum''
** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum''
** [[1lf9]] - TtGAM + acarbose<br />
** [[1lf9]] - TtGAM + acarbose<br />
* β/α-amylase
* β/α-amylase
 +
** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br />
** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br />
** [[3voc]] – PpBAAM<br />
** [[3voc]] – PpBAAM<br />
* Maltohexaose-producing amylase
* Maltohexaose-producing amylase
 +
** [[1wp6]] - BacMAM
** [[1wp6]] - BacMAM
**[[1wpc]] – BacMAM + saccharide<br />
**[[1wpc]] – BacMAM + saccharide<br />
* Maltogenic amylase
* Maltogenic amylase
 +
** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.''
** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.''
* Taka amylase
* Taka amylase
-
** [[2taa]], [[3vx0]], [[3vx1]] – AoTAM
+
 
-
** [[7taa]] – AoTAM + acarbose
+
** [[2taa]], [[3vx0]], [[3vx1]]< [[6yq7]] – AoTAM <br />
 +
** [[7taa]] – AoTAM + acarbose<br />
 +
** [[6yq9]], [[6yqa]], [[6yqb]], [[6yqc]] – AoTAM + inhibitor<br />
}}
}}
 +
[[Category: Topic Page]]

Current revision

3D structures of Amylase

Updated on 29-September-2024

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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