This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Fatty acid-binding protein

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:06, 26 June 2019) (edit) (undo)
 
(One intermediate revision not shown.)
Line 10: Line 10:
The <scene name='48/487562/Cv/5'>FABP active site binds fatty acids</scene> ({{Template:ColorKey_Hydrophobic}}, {{Template:ColorKey_Polar}})<ref>PMID:10854433</ref>.
The <scene name='48/487562/Cv/5'>FABP active site binds fatty acids</scene> ({{Template:ColorKey_Hydrophobic}}, {{Template:ColorKey_Polar}})<ref>PMID:10854433</ref>.
-
</StructureSection>
 
==3D structures of fatty acid-binding protein==
==3D structures of fatty acid-binding protein==
 +
[[Fatty acid-binding protein 3D structures]]
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+
</StructureSection>
-
{{#tree:id=OrganizedByTopic|openlevels=0|
+
-
 
+
-
*Intestinal fatty acid-binding protein
+
-
 
+
-
**[[1ael]], [[1a57]], [[1sa8]] - rIFABP – rat – NMR<BR />
+
-
**[[1t8v]] - rIFABP (mutant) – NMR<BR />
+
-
**[[1ifb]], [[1ifc]] - rIFABP <br />
+
-
**[[1dc9]] - rIFABP (mutant)<br />
+
-
**[[1kzw]], [[3ifb]] - hIFABP – human – NMR<BR />
+
-
**[[1kzx]] - hIFABP (mutant) – NMR<BR />
+
-
 
+
-
*''Intestinal fatty acid-binding protein binary complex''
+
-
 
+
-
**[[3akm]], [[2mo5]] - hIFABP + fatty acid analog<br />
+
-
**[[2mji]] - hIFABP + ketorolac - NMR<br />
+
-
**[[3akn]], [[1icm]], [[1icn]], [[2ifb]] - rIFABP + fatty acid analog<br />
+
-
**[[1ure]] - rIFABP + palmitate – NMR<BR />
+
-
 
+
-
*Epidermal fatty acid-binding protein
+
-
 
+
-
**[[1b56]], [[1jjj]], [[4lkp]] - hEFABP <br />
+
-
**[[4azr]], [[4lkt]] - hEFABP + fatty acid<br />
+
-
**[[4azn]], [[4azo]] - mEFABP <br />
+
-
**[[4azp]], [[4azq]] - mEFABP + fatty acid<br />
+
-
**[[4azm]] - hEFABP + inhibitor<br />
+
-
 
+
-
*Heart-type fatty acid-binding protein
+
-
 
+
-
**[[1g5w]] - hHFABP – NMR<BR />
+
-
**[[3rsw]], [[5ce4]] – hHFABP<br />
+
-
**[[3wbg]] – hHFABP + sulfonate derivative<br />
+
-
**[[5hz9]] – hHFABP + inhibitor<br />
+
-
**[[3wvm]], [[4tjz]], [[4tkb]], [[4tkh]], [[4tkj]], [[4wbk]], [[3wxq]] - hHFABP + fatty acid<br />
+
-
**[[1bwy]] – HFABP – bovine<br />
+
-
**[[5d8j]] – HFABP + Fab – mouse<br />
+
-
 
+
-
*Brain-type fatty acid-binding protein
+
-
 
+
-
**[[1fdq]], [[1jjx]] - hBFABP<br />
+
-
**[[1fe3]] - hBFABP + oleate<br />
+
-
 
+
-
*Liver-type fatty acid-binding protein
+
-
 
+
-
**[[1p6p]] - LFABP – toad<br />
+
-
**[[1tvq]], [[1mvg]] - cLFABP – chicken<br />
+
-
**[[1zry]] - cLFABP - NMR<BR />
+
-
**[[2f73]], [[3stn]], [[3b2h]], [[3b2i]], [[3b2j]], [[3b2k]], [[3b2l]], [[3vg2]], [[3vg3]], [[3vg4]], [[3vg5]], [[3vg6]], [[3vg7]] - hLFABP<br />
+
-
**[[2py1]], [[2l67]], [[2l68]] - hLFABP – NMR<BR />
+
-
**[[2ju3]], [[2ju7]] - rLFABP – NMR<BR />
+
-
**[[2ft9]] – AmLFABP - ''Ambystoma mexicanum''
+
-
 
+
-
*''Liver-type fatty acid-binding protein binary complex''
+
-
 
+
-
**[[3stk]], [[3stm]] - hLFABP + palmitate<br />
+
-
**[[2lkk]] - hLFABP + oleate – NMR<br />
+
-
**[[2ju8]] - rLFABP + oleate – NMR<BR />
+
-
**[[1lfo]] - rLFABP + oleate<br />
+
-
**[[1tw4]], [[2jn3]], [[2lfo]] - cLFABP + cholate<br />
+
-
**[[2jn3]] - cLFABP + chenodeoxycholate<br />
+
-
**[[2k62]] - cLFABP + bile acid-based Gd chelate<br />
+
-
**[[2ftb]] - AmLFABP + oleate<br />
+
-
**[[2qo4]] – zLFABP + cholate – zebrafish<br />
+
-
**[[2qo5]], [[2qo6]] – zLFABP (mutant) + cholate <br />
+
-
 
+
-
*Adipocyte fatty acid-binding protein
+
-
 
+
-
**[[1tou]], [[2hnx]], [[3q6l]], [[3rzy]] - hAFABP<br />
+
-
**[[1lib]], [[1alb]] – mAFABP<br />
+
-
**[[1g7n]], [[1ab0]], [[1acd]] - mAFABP (mutant) <br />
+
-
**[[1tow]] - hAFABP + carbazole butanoic acid<br />
+
-
**[[2nnq]], [[3fr2]], [[3fr4]], [[3fr5]], [[5hz6]], [[5hz8]], [[5d45]], [[5d47]], [[5d48]], [[5d4a]], [[5edb]], [[5edc]], [[4nns]], [[4nnt]] - hAFABP + inhibitor<br />
+
-
**[[3p6c]] - hAFABP + citrate<br />
+
-
**[[3p6d]], [[3p6e]] - hAFABP + propionate derivative<br />
+
-
**[[3p6f]] - hAFABP + phenyl-butyrate<br />
+
-
**[[3p6g]], [[3p6h]] - hAFABP + ibuprofen<br />
+
-
**[[2qm9]] - mAFABP + troglitazone <br />
+
-
**[[2q9s]], [[1lid]], [[1lie]], [[1lif]], [[1adl]] - mAFABP + fatty acid<br />
+
-
**[[1g74]] - mAFABP (mutant) + fatty acid <br />
+
-
**[[3hk1]], [[3js1]], [[3jsq]] - mAFABP + inhibitor<br />
+
-
**[[1lic]], [[2ans]] – mAFABP + sulfonic acid derivative<br />
+
-
**[[1a18]] - mAFABP + phenanthroline <br />
+
-
**[[1a2d]] - mAFABP + pyridoxamine <br />
+
-
**[[5c0n]] - mAFABP + Fab <br />
+
-
 
+
-
*Flight muscle fatty acid-binding protein
+
-
 
+
-
**[[2flj]], [[1ftp]] - LMFABP – locust
+
-
 
+
-
*Muscle fatty acid-binding protein
+
-
 
+
-
**[[2hmb]] – hMFABP <br />
+
-
**[[1hmr]], [[1hms]], [[1hmt]] – hMFABP + fatty acid<br />
+
-
 
+
-
*Testis fatty acid-binding protein
+
-
 
+
-
**[[4a60]] - hTFABP
+
-
 
+
-
*Ileal bile acid-binding protein (Gastrotropin)
+
-
 
+
-
**[[3elx]] – zIBABP <br />
+
-
**[[3elz]], [[3em0]] – zIBABP + cholate<br />
+
-
**[[1eal]] – pIBABP - pig <br />
+
-
**[[1eio]] – pIBABP + cholate<br />
+
-
**[[1o1u]], [[5l8i]] – hIBABP <br />
+
-
**[[1o1v]] – hIBABP + cholytaurine<br />
+
-
**[[2mm3]], [[5i8o]] – hIBABP + cholate<br />
+
-
**[[5i8n]] – hIBABP + inhibitor<br />
+
-
 
+
-
*Other fatty acid-binding protein
+
-
**[[2poa]] - SmFABP (mutant) - ''Schistosoma mansoni'' – NMR<BR />
 
-
**[[1mdc]] – FABP – tobacco hornworm<br />
 
-
**[[4jgx]] - FABP – ''Yarrowia lipolytica''<br />
 
-
**[[1vyf]], [[1vyg]] – SmFABP + fatty acid<br />
 
-
**[[3w9k]] – FABP + fatty acid – ''Sulfolobus tokodaii''<br />
 
-
**[[2n93]] – FABP – ''Luciola cerata'' - NMR<br />
 
-
**[[5bvq]] – PpFABP – ''Pygoscelis papua'' <br />
 
-
**[[5bvs]], [[5bvt]] – PpFABP + fatty acid <br />
 
-
}}
 
== References ==
== References ==
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Human brain-type fatty acid-binding protein complex with oleate (PDB code 1fe3)

Drag the structure with the mouse to rotate

References

  1. Chmurzynska A. The multigene family of fatty acid-binding proteins (FABPs): function, structure and polymorphism. J Appl Genet. 2006;47(1):39-48. PMID:16424607 doi:http://dx.doi.org/10.1007/BF03194597
  2. Balendiran GK, Schnutgen F, Scapin G, Borchers T, Xhong N, Lim K, Godbout R, Spener F, Sacchettini JC. Crystal structure and thermodynamic analysis of human brain fatty acid-binding protein. J Biol Chem. 2000 Sep 1;275(35):27045-54. PMID:10854433 doi:10.1074/jbc.M003001200

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

Personal tools