6qzo
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6qzo is ON HOLD until Paper Publication Authors: Rozeboom, H.J., Fraaije, M.W. Description: Crystal structure of DyP-type peroxidase from Cellulomo...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of DyP-type peroxidase from Cellulomonas bogoriensis== | |
| + | <StructureSection load='6qzo' size='340' side='right'caption='[[6qzo]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6qzo]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellulomonas_bogoriensis_69B4_=_DSM_16987 Cellulomonas bogoriensis 69B4 = DSM 16987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QZO FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qzo OCA], [https://pdbe.org/6qzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qzo RCSB], [https://www.ebi.ac.uk/pdbsum/6qzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qzo ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A0A0BZU2_9CELL A0A0A0BZU2_9CELL] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | DyP-type peroxidases are heme-containing enzymes that have received increasing attention over recent years with regards to their potential as biocatalysts. A novel DyP-type peroxidase (CboDyP) was discovered from the alkaliphilic cellulomonad, Cellulomonas bogoriensis, which could be overexpressed in Escherichia coli. The biochemical characterization of the recombinant enzyme showed that it is a heme-containing enzyme capable to act as a peroxidase on several dyes. With the tested substrates, the enzyme is most active at acidic pH values and is quite tolerant towards solvents. The crystal structure of CboDyP was solved which revealed atomic details of the dimeric heme-containing enzyme. A peculiar feature of CboDyP is the presence of a glutamate in the active site which in most other DyPs is an aspartate, being part of the DyP-typifying sequence motif GXXDG. The E201D CboDyP mutant was prepared and analyzed which revealed that the mutant enzyme shows a significantly higher activity on several dyes when compared with the wild-type enzyme. | ||
| - | + | Characterization of a New DyP-Peroxidase from the Alkaliphilic Cellulomonad, Cellulomonas bogoriensis.,Habib MH, Rozeboom HJ, Fraaije MW Molecules. 2019 Mar 27;24(7). pii: molecules24071208. doi:, 10.3390/molecules24071208. PMID:30934796<ref>PMID:30934796</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Fraaije | + | <div class="pdbe-citations 6qzo" style="background-color:#fffaf0;"></div> |
| - | [[Category: Rozeboom | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Cellulomonas bogoriensis 69B4 = DSM 16987]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Fraaije MW]] | ||
| + | [[Category: Rozeboom HJ]] | ||
Current revision
Crystal structure of DyP-type peroxidase from Cellulomonas bogoriensis
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